Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D9Y32_RS04280 Genome accession   NZ_CP033218
Coordinates   860597..861043 (+) Length   148 a.a.
NCBI ID   WP_009330244.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TCCC 11148     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 855597..866043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS04265 (D9Y32_04265) - 855655..857709 (-) 2055 WP_017473996.1 hydantoinase/oxoprolinase family protein -
  D9Y32_RS04270 (D9Y32_04270) - 858113..858853 (+) 741 WP_003178817.1 ribonuclease YeeF family protein -
  D9Y32_RS04275 (D9Y32_04275) - 858969..860229 (+) 1261 Protein_821 methyl-accepting chemotaxis protein -
  D9Y32_RS04280 (D9Y32_04280) nucA/comI 860597..861043 (+) 447 WP_009330244.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D9Y32_RS04285 (D9Y32_04285) nin/comJ 861061..861459 (+) 399 WP_142782153.1 competence protein ComJ Regulator
  D9Y32_RS04290 (D9Y32_04290) - 861498..862934 (-) 1437 WP_003178806.1 glycoside hydrolase family 1 protein -
  D9Y32_RS04295 (D9Y32_04295) - 863004..863730 (-) 727 Protein_825 AAA family ATPase -
  D9Y32_RS04300 (D9Y32_04300) - 863827..864378 (-) 552 WP_061575968.1 NAD(P)H-dependent oxidoreductase -
  D9Y32_RS04305 (D9Y32_04305) - 864562..865437 (+) 876 WP_142782154.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16180.11 Da        Isoelectric Point: 5.2521

>NTDB_id=322700 D9Y32_RS04280 WP_009330244.1 860597..861043(+) (nucA/comI) [Bacillus licheniformis strain TCCC 11148]
MDKIKSLLITLLAVAVVIIGIVSGDFFTSEHQPSGRQNGSNYDEVLIFPSDRYPETGAHIRKAIKKGHSEICTIDRDGAA
ERRKDSLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKVLFKIN

Nucleotide


Download         Length: 447 bp        

>NTDB_id=322700 D9Y32_RS04280 WP_009330244.1 860597..861043(+) (nucA/comI) [Bacillus licheniformis strain TCCC 11148]
ATGGACAAGATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGTATTGTATCTGGCGACTTTTT
CACTTCAGAACACCAGCCTTCGGGCCGGCAAAACGGCTCAAACTACGATGAAGTGCTGATTTTTCCTTCGGACCGCTATC
CTGAAACAGGCGCACACATTCGAAAGGCTATCAAAAAAGGGCACTCCGAAATCTGTACGATCGACAGGGACGGAGCCGCC
GAACGCCGAAAGGATTCATTGAAAGATGTTCCTTCCAAATCAGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCTGTCGAGTATATCAGCCCGTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGGACGAAAGTACTTTTCAAGATTAATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.626

99.324

0.642

Multiple sequence alignment