Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   DA787_RS12425 Genome accession   NZ_CP033205
Coordinates   2416135..2416566 (-) Length   143 a.a.
NCBI ID   WP_004398628.1    Uniprot ID   -
Organism   Bacillus subtilis strain MBI 600     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2411135..2421566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DA787_RS12375 (DA787_12360) sinI 2411329..2411502 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  DA787_RS12380 (DA787_12365) sinR 2411536..2411871 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  DA787_RS12385 (DA787_12370) tasA 2411964..2412749 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  DA787_RS12390 (DA787_12375) sipW 2412813..2413385 (-) 573 WP_003246088.1 signal peptidase I SipW -
  DA787_RS12395 (DA787_12380) tapA 2413369..2414130 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  DA787_RS12400 (DA787_12385) yqzG 2414402..2414728 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  DA787_RS12405 (DA787_12390) spoIITA 2414770..2414949 (-) 180 WP_003230176.1 YqzE family protein -
  DA787_RS12410 (DA787_12395) comGG 2415020..2415394 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  DA787_RS12415 (DA787_12400) comGF 2415395..2415778 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  DA787_RS12420 (DA787_12405) comGE 2415804..2416151 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  DA787_RS12425 (DA787_12410) comGD 2416135..2416566 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  DA787_RS12430 (DA787_12415) comGC 2416556..2416852 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  DA787_RS12435 (DA787_12420) comGB 2416866..2417903 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  DA787_RS12440 (DA787_12425) comGA 2417890..2418960 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  DA787_RS12450 (DA787_12435) corA 2419372..2420325 (-) 954 WP_004399136.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16008.62 Da        Isoelectric Point: 10.0432

>NTDB_id=322563 DA787_RS12425 WP_004398628.1 2416135..2416566(-) (comGD) [Bacillus subtilis strain MBI 600]
MNIKLNEEKGFTLLESLLVLSLASILLVAVFTTLPPAYDNTAVRQAASQLKNDIMLTQQTAISRQQRTKILFHKKEYQLV
IGDTVIERPYATGLSIELLTLKDRLEFNEKGHPNAGGKIRVKGHAVYDITVYLGSGRVNVERK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=322563 DA787_RS12425 WP_004398628.1 2416135..2416566(-) (comGD) [Bacillus subtilis strain MBI 600]
TTGAACATTAAATTAAACGAGGAGAAGGGGTTTACCCTTTTAGAAAGTTTGCTTGTGTTAAGCCTTGCCTCTATCCTCCT
GGTGGCCGTCTTCACTACACTTCCTCCTGCTTATGACAATACAGCTGTCCGACAGGCAGCAAGTCAGCTGAAAAATGATA
TTATGCTCACACAGCAGACTGCTATTTCCCGTCAACAAAGAACAAAAATTCTCTTTCATAAAAAAGAATATCAATTAGTC
ATTGGTGATACGGTTATTGAACGTCCGTATGCAACGGGACTTTCTATAGAACTGCTGACATTAAAAGACCGTTTGGAATT
TAATGAGAAAGGGCACCCGAATGCAGGCGGAAAAATACGAGTAAAAGGCCATGCCGTTTATGACATAACAGTTTATCTAG
GGAGCGGGAGAGTCAATGTGGAGAGAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment