Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | D2B33_RS07085 | Genome accession | NZ_CP033198 |
| Coordinates | 1339826..1340161 (-) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain FA6 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1334826..1345161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2B33_RS07040 (D2B33_07080) | comGD | 1335104..1335541 (+) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
| D2B33_RS07045 (D2B33_07085) | comGE | 1335525..1335872 (+) | 348 | WP_020452174.1 | competence type IV pilus minor pilin ComGE | - |
| D2B33_RS07050 (D2B33_07090) | comGF | 1335787..1336269 (+) | 483 | WP_228119627.1 | competence type IV pilus minor pilin ComGF | - |
| D2B33_RS07055 (D2B33_07095) | comGG | 1336281..1336646 (+) | 366 | WP_020452172.1 | competence type IV pilus minor pilin ComGG | - |
| D2B33_RS07060 (D2B33_07100) | - | 1336735..1336917 (+) | 183 | WP_020452171.1 | YqzE family protein | - |
| D2B33_RS07065 (D2B33_07105) | - | 1336947..1337267 (-) | 321 | WP_020452170.1 | YqzG/YhdC family protein | - |
| D2B33_RS07070 (D2B33_07110) | tapA | 1337545..1338273 (+) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| D2B33_RS07075 (D2B33_07115) | sipW | 1338270..1338854 (+) | 585 | WP_020452168.1 | signal peptidase I SipW | - |
| D2B33_RS07080 (D2B33_07120) | tasA | 1338927..1339721 (+) | 795 | WP_020452167.1 | biofilm matrix protein TasA | - |
| D2B33_RS07085 (D2B33_07125) | sinR | 1339826..1340161 (-) | 336 | WP_023855185.1 | transcriptional regulator SinR | Regulator |
| D2B33_RS07090 (D2B33_07130) | sinI | 1340195..1340371 (-) | 177 | WP_020452165.1 | anti-repressor SinI | Regulator |
| D2B33_RS07095 (D2B33_07135) | - | 1340562..1341356 (-) | 795 | WP_020452164.1 | YqhG family protein | - |
| D2B33_RS07100 (D2B33_07140) | - | 1341363..1343042 (-) | 1680 | WP_020452163.1 | DEAD/DEAH box helicase | - |
| D2B33_RS07105 (D2B33_07145) | gcvT | 1343637..1344731 (+) | 1095 | WP_020452162.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=322438 D2B33_RS07085 WP_023855185.1 1339826..1340161(-) (sinR) [Bacillus paralicheniformis strain FA6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=322438 D2B33_RS07085 WP_023855185.1 1339826..1340161(-) (sinR) [Bacillus paralicheniformis strain FA6]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |