Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | D2B33_RS07025 | Genome accession | NZ_CP033198 |
| Coordinates | 1332703..1333767 (+) | Length | 354 a.a. |
| NCBI ID | WP_020452178.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain FA6 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1327703..1338767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D2B33_RS06985 (D2B33_07025) | - | 1328128..1329237 (+) | 1110 | WP_020452183.1 | hypothetical protein | - |
| D2B33_RS06990 (D2B33_07030) | - | 1329253..1329567 (+) | 315 | WP_020452182.1 | MTH1187 family thiamine-binding protein | - |
| D2B33_RS06995 (D2B33_07035) | - | 1329628..1329801 (-) | 174 | WP_003183486.1 | DUF2759 domain-containing protein | - |
| D2B33_RS07000 (D2B33_07040) | - | 1329957..1330595 (+) | 639 | WP_020452181.1 | MBL fold metallo-hydrolase | - |
| D2B33_RS07005 (D2B33_07045) | - | 1330631..1330876 (-) | 246 | WP_020452180.1 | DUF2626 domain-containing protein | - |
| D2B33_RS07010 (D2B33_07050) | - | 1331087..1331464 (+) | 378 | WP_003183482.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| D2B33_RS07020 (D2B33_07060) | - | 1331706..1332545 (+) | 840 | WP_020452179.1 | STAS domain-containing protein | - |
| D2B33_RS07025 (D2B33_07065) | comGA | 1332703..1333767 (+) | 1065 | WP_020452178.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| D2B33_RS07030 (D2B33_07070) | comGB | 1333757..1334791 (+) | 1035 | WP_041817253.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| D2B33_RS07035 (D2B33_07075) | comGC | 1334805..1335098 (+) | 294 | WP_020452176.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| D2B33_RS07040 (D2B33_07080) | comGD | 1335104..1335541 (+) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
| D2B33_RS07045 (D2B33_07085) | comGE | 1335525..1335872 (+) | 348 | WP_020452174.1 | competence type IV pilus minor pilin ComGE | - |
| D2B33_RS07050 (D2B33_07090) | comGF | 1335787..1336269 (+) | 483 | WP_228119627.1 | competence type IV pilus minor pilin ComGF | - |
| D2B33_RS07055 (D2B33_07095) | comGG | 1336281..1336646 (+) | 366 | WP_020452172.1 | competence type IV pilus minor pilin ComGG | - |
| D2B33_RS07060 (D2B33_07100) | - | 1336735..1336917 (+) | 183 | WP_020452171.1 | YqzE family protein | - |
| D2B33_RS07065 (D2B33_07105) | - | 1336947..1337267 (-) | 321 | WP_020452170.1 | YqzG/YhdC family protein | - |
| D2B33_RS07070 (D2B33_07110) | tapA | 1337545..1338273 (+) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39806.27 Da Isoelectric Point: 9.1063
>NTDB_id=322435 D2B33_RS07025 WP_020452178.1 1332703..1333767(+) (comGA) [Bacillus paralicheniformis strain FA6]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKVSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASIFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKVSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDNCSLYCRLSRPVRRASIFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
Nucleotide
Download Length: 1065 bp
>NTDB_id=322435 D2B33_RS07025 WP_020452178.1 1332703..1333767(+) (comGA) [Bacillus paralicheniformis strain FA6]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTCCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGGTGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCATCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTCCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGGTGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAATATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAACTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCATCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACATTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
67.514 |
100 |
0.675 |
| pilB | Vibrio cholerae strain A1552 |
38.671 |
93.503 |
0.362 |