Detailed information NTG0032238

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: GALLO_RS11540
• Genome accession: NC_013798
• Coordinates: 2336547..2337641 (+)
• Length: 364 a.a.
• NCBI ID: WP_009855213.1
• Uniprot ID: -
• Organism: Streptococcus gallolyticus UCN34
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2331547..2342641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GALLO_RS11515 (GALLO_2248)	pgsA	2331972..2332526 (-)	555	WP_009855208.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
GALLO_RS11520 (GALLO_2249)	-	2332536..2333480 (-)	945	WP_009855209.1	helix-turn-helix domain-containing protein	-
GALLO_RS11525 (GALLO_2250)	yfmH	2333544..2334833 (-)	1290	WP_012962645.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
GALLO_RS11530 (GALLO_2251)	yfmF	2334834..2336078 (-)	1245	WP_009855211.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
GALLO_RS11535 (GALLO_2252)	yaaA	2336167..2336544 (+)	378	WP_012962646.1	S4 domain-containing protein YaaA	-
GALLO_RS11540 (GALLO_2253)	recF	2336547..2337641 (+)	1095	WP_009855213.1	DNA replication/repair protein RecF	Machinery gene
GALLO_RS11545 (GALLO_2254)	-	2337704..2338570 (-)	867	WP_009855214.1	GRP family sugar transporter	-
GALLO_RS11550 (GALLO_2255)	guaB	2338810..2340291 (-)	1482	WP_012962647.1	IMP dehydrogenase	-
GALLO_RS11555 (GALLO_2256)	trpS	2340552..2341574 (-)	1023	WP_009855216.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 41763.80 Da
• Isoelectric Point: 6.9437

>NTDB_id=32238 GALLO_RS11540 WP_009855213.1 2336547..2337641(+) (recF) [Streptococcus gallolyticus UCN34]
MWIQKITLKNYRNYLTSELEFSPGLNVFIGKNAQGKTNFLEAIYFLSLTRSHRTRTDKELIHFDAKELLVSGILQRSSGT
VPLDISLSSKGRVTKVNHLKQAKLSDYIGVMTVVLFAPEDLQLIKGAPSLRRKFIDIDLGQIKPIYLADLSNYNHVLKQR
NTYLKTAEKVDTDFLAVLDEQLADFGSRVMEHRLDFISNLEKEADRYHYAISNGVEHLSIHYLSSVSFQEKDDIKPNFLK
ALQKNHQRDIFKKNTSVGPHRDDLEFFINDMPANFGSQGQHRSLILSLKMAEIELIKTVTGDYPILLLDDVMSELDNYRQ
TELLKMIIDKNVQTFITTTSLDHLSQLPDELKIFTVNQGNIQEN

Nucleotide

• Length: 1095 bp

>NTDB_id=32238 GALLO_RS11540 WP_009855213.1 2336547..2337641(+) (recF) [Streptococcus gallolyticus UCN34]
ATGTGGATTCAAAAAATAACGTTAAAAAATTATCGTAACTATCTGACTAGTGAGCTTGAATTTTCTCCTGGACTTAATGT
TTTCATCGGAAAAAACGCTCAAGGAAAGACAAATTTCTTAGAAGCAATTTATTTCCTTTCTCTTACCCGCAGCCACCGCA
CACGAACAGACAAAGAGTTGATTCATTTTGATGCCAAAGAACTTCTGGTTTCTGGTATTTTACAACGTTCAAGTGGTACT
GTTCCTTTAGATATTAGTCTTTCAAGTAAGGGACGTGTTACAAAAGTTAATCATCTAAAACAAGCTAAGTTATCAGACTA
TATTGGTGTAATGACCGTTGTTCTTTTTGCACCTGAAGATTTACAACTCATCAAAGGCGCTCCAAGCCTTCGTCGAAAAT
TTATTGACATTGATTTAGGGCAAATAAAGCCGATTTATTTAGCTGATTTGTCTAATTATAACCACGTGCTAAAACAGCGT
AATACTTATCTTAAAACGGCTGAAAAAGTTGATACTGATTTTTTAGCTGTGCTTGATGAGCAATTAGCTGATTTTGGTAG
CCGTGTCATGGAACATCGTTTAGATTTCATTTCTAATTTAGAAAAAGAAGCCGACCGCTATCATTATGCCATTTCAAACG
GCGTTGAACATCTTAGTATCCATTATCTGTCATCTGTTTCCTTCCAAGAAAAGGATGACATTAAGCCAAATTTCTTAAAA
GCTTTACAAAAAAATCATCAGCGTGATATTTTCAAAAAGAATACAAGTGTTGGTCCCCACCGTGATGATTTAGAATTTTT
CATCAATGATATGCCAGCAAATTTTGGCAGCCAAGGTCAGCACCGTAGCCTAATCTTATCACTAAAAATGGCTGAAATTG
AGTTAATAAAAACAGTAACTGGTGATTATCCTATTTTACTTTTAGATGATGTCATGAGCGAGCTTGATAATTACAGACAA
ACCGAACTCTTAAAAATGATTATTGATAAAAACGTTCAAACCTTCATTACAACAACAAGCCTCGACCACCTATCACAGCT
TCCGGACGAGTTAAAAATCTTTACAGTTAATCAAGGTAACATTCAAGAAAATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-359)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	64.835	100	0.648
recF	Bacillus subtilis subsp. subtilis str. 168	46.705	95.879	0.448