Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EBA03_RS16600 Genome accession   NZ_CP033182
Coordinates   3500896..3502350 (+) Length   484 a.a.
NCBI ID   WP_024743350.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain CFBP1952     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3495896..3507350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA03_RS23500 (EBA03_16590) - 3496196..3496605 (-) 410 Protein_3010 DNA-binding protein -
  EBA03_RS16585 (EBA03_16595) sucD 3496709..3497584 (-) 876 WP_024743348.1 succinate--CoA ligase subunit alpha -
  EBA03_RS16590 (EBA03_16600) sucC 3497609..3498778 (-) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EBA03_RS16595 (EBA03_16605) - 3499012..3500625 (+) 1614 WP_024743349.1 HAMP domain-containing sensor histidine kinase -
  EBA03_RS16600 (EBA03_16610) pilR 3500896..3502350 (+) 1455 WP_024743350.1 sigma-54 dependent transcriptional regulator Regulator
  EBA03_RS23175 - 3502497..3502754 (+) 258 WP_230078506.1 hypothetical protein -
  EBA03_RS16610 (EBA03_16620) - 3502747..3503199 (+) 453 WP_196381722.1 Fic family protein -
  EBA03_RS16615 (EBA03_16625) pilB 3503208..3504941 (-) 1734 WP_024743351.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EBA03_RS16620 (EBA03_16630) - 3504976..3506502 (-) 1527 WP_024743352.1 membrane protein -
  EBA03_RS16625 (EBA03_16635) - 3506472..3507047 (-) 576 WP_233488061.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52489.20 Da        Isoelectric Point: 6.6433

>NTDB_id=322141 EBA03_RS16600 WP_024743350.1 3500896..3502350(+) (pilR) [Xanthomonas oryzae pv. oryzae strain CFBP1952]
MRRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASS
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=322141 EBA03_RS16600 WP_024743350.1 3500896..3502350(+) (pilR) [Xanthomonas oryzae pv. oryzae strain CFBP1952]
TTGCGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGCCACCGGAACAGGCCAGCAGC
CTGCTCGGCGACTCAAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGG
ACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCACTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCAGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCAATCCAGAAAGCGCTGG
AGGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAATTAGGCATCACGTTTCGGGCGTTGCGTTACAAGTTAAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469

Multiple sequence alignment