Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EBA13_RS16560 Genome accession   NZ_CP033173
Coordinates   3494301..3495755 (+) Length   484 a.a.
NCBI ID   WP_024743350.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain CFBP8172     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3489301..3500755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBA13_RS23400 (EBA13_16545) - 3489601..3490010 (-) 410 Protein_3004 DNA-binding protein -
  EBA13_RS16545 (EBA13_16550) sucD 3490114..3490989 (-) 876 WP_024743348.1 succinate--CoA ligase subunit alpha -
  EBA13_RS16550 (EBA13_16555) sucC 3491014..3492183 (-) 1170 WP_019300809.1 ADP-forming succinate--CoA ligase subunit beta -
  EBA13_RS16555 (EBA13_16560) - 3492417..3494030 (+) 1614 WP_024743349.1 HAMP domain-containing sensor histidine kinase -
  EBA13_RS16560 (EBA13_16565) pilR 3494301..3495755 (+) 1455 WP_024743350.1 sigma-54 dependent transcriptional regulator Regulator
  EBA13_RS23080 - 3495902..3496159 (+) 258 WP_230078506.1 hypothetical protein -
  EBA13_RS16570 (EBA13_16575) - 3496152..3496604 (+) 453 WP_196381722.1 Fic family protein -
  EBA13_RS16575 (EBA13_16580) pilB 3496613..3498346 (-) 1734 WP_024743351.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EBA13_RS16580 (EBA13_16585) - 3498381..3499907 (-) 1527 WP_024743352.1 membrane protein -
  EBA13_RS16585 (EBA13_16590) - 3499877..3500452 (-) 576 WP_233488061.1 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52489.20 Da        Isoelectric Point: 6.6433

>NTDB_id=321970 EBA13_RS16560 WP_024743350.1 3494301..3495755(+) (pilR) [Xanthomonas oryzae pv. oryzae strain CFBP8172]
MRRDPLDNCRPSSRWAIVRSMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIARQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASS
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALDHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAATPGSAAVEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=321970 EBA13_RS16560 WP_024743350.1 3494301..3495755(+) (pilR) [Xanthomonas oryzae pv. oryzae strain CFBP8172]
TTGCGCCGCGACCCGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGCAGCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATTCGCGAGTTGCTTGTTCTCACCTTGGGCCGTATGGGGCTGCGCATCAGCACCG
CTGCCAATCTGGCCGAAGCGCGCGAATTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGCTTGCCCGAC
GGCAATGGCATCGAGCTGGTCACCGAAATCGCCAGGCAGTACCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAACCGGTGGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCACCGCCGCCGCCACCGGAACAGGCCAGCAGC
CTGCTCGGCGACTCAAGCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGCAGTCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGGGTGGGCAAGGAGCTGGTTGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATTCAGGAAAAATCGGTGCGTCCGGTCGGCGCCTCCGGCGAAACCCTGGTGG
ACGTACGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGTTTTCGACACGATCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACTTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCGCTCGACGCACTGGATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCACTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCACACCCGGCAGCGCCGCCGTGGAACCACGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCAGCCCTACCCTCCTACATCGAACAACTGGAACGCGCCGCAATCCAGAAAGCGCTGG
AGGAAAACCGCTGGAACAAGACCAAGACCGCTGCGCAATTAGGCATCACGTTTCGGGCGTTGCGTTACAAGTTAAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

48.922

95.868

0.469

Multiple sequence alignment