Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   GALLO_RS04355 Genome accession   NC_013798
Coordinates   860409..862616 (+) Length   735 a.a.
NCBI ID   WP_012961776.1    Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855409..867616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS04330 (GALLO_0808) miaA 855748..856635 (+) 888 WP_012961772.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  GALLO_RS04335 (GALLO_0809) hflX 856774..858012 (+) 1239 WP_003064155.1 GTPase HflX -
  GALLO_RS04340 (GALLO_0810) - 858005..858643 (+) 639 WP_012961773.1 cystathionine beta-lyase -
  GALLO_RS04345 (GALLO_0811) rnz 858683..859612 (+) 930 WP_012961774.1 ribonuclease Z -
  GALLO_RS04350 (GALLO_0812) - 859609..860367 (+) 759 WP_012961775.1 SDR family NAD(P)-dependent oxidoreductase -
  GALLO_RS04355 (GALLO_0813) recJ 860409..862616 (+) 2208 WP_012961776.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  GALLO_RS04360 (GALLO_0814) - 862783..864048 (+) 1266 WP_009853929.1 DUF4352 domain-containing protein -
  GALLO_RS04365 (GALLO_0815) - 864248..864511 (+) 264 WP_012961777.1 hypothetical protein -
  GALLO_RS04370 (GALLO_0816) - 864604..865953 (-) 1350 WP_012961778.1 hypothetical protein -
  GALLO_RS04375 (GALLO_0817) - 866051..866830 (-) 780 WP_012961779.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82327.81 Da        Isoelectric Point: 4.3515

>NTDB_id=32185 GALLO_RS04355 WP_012961776.1 860409..862616(+) (recJ) [Streptococcus gallolyticus UCN34]
MITSKYNWKNIEKGPDNGFFELTKKEKLTELASQILYSRGVDTAEKLTQFLSTDLSQLHDPYLLHDMDKAVERIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHGLPAELPEAFAIVHPEHPEADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQEIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRILEQIAQPVIVLNIEDGLAKGSARSIEAINIFHALDE
HRGLFEAFGGHAGAAGMTLVTENLDKLSQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVHSLEKLEPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQTTVQLMLEDARVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKDLSQYLNIPDILLVKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVKFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=32185 GALLO_RS04355 WP_012961776.1 860409..862616(+) (recJ) [Streptococcus gallolyticus UCN34]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGGGCCAGATAATGGCTTTTTTGAGCTAACAAAAAAAGAAAA
ACTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGCAGAAAAATTGACTCAATTTTTATCAACGG
ATTTGTCACAATTGCATGACCCTTACCTTTTACATGACATGGATAAAGCGGTTGAGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGACTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCCCTTGAAAT
GTTAGGCGCTGAAGCTCAAGTTTATCTGCCAAATCGTTTCACAGATGGTTATGGTCCCAATGAGTCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCATGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTCATTGTGACAGATCACCACGGTTTGCCAGCAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAGAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTTGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGACC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGACGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAGGAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGTTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTTAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCCAGAAGTATTGAGGCCATTAATATTTTCCATGCCCTTGATGAG
CACCGTGGCTTATTTGAAGCCTTTGGTGGACACGCTGGCGCTGCTGGAATGACCTTGGTGACTGAAAATCTTGATAAATT
ATCACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCACAGTCTTGAAAAATTGGAACCATTTGGCATGGACAATCCAAAACCA
GTCTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACCATGGGACAAAATGGAGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGACCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGCGCAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGGCAAACGACTGTTCAATTAATGTTGGAAGATGCGCGTGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACAGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGATAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACACGTGACCAATTTGCTAAGCTTTATAAA
ACTATCTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAATATCCCTGATATTTT
ACTCGTTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACCATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGCAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTAAATTCCAAGAGTTAATGGCACTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)

DHHA1 domain (DHHA1)

(317-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.568

100

0.68
  recJ Bacillus subtilis subsp. subtilis str. 168

38.273

100

0.404

Multiple sequence alignment