Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | D0856_RS17480 | Genome accession | NZ_CP033144 |
| Coordinates | 3602315..3602830 (+) | Length | 171 a.a. |
| NCBI ID | WP_038896738.1 | Uniprot ID | - |
| Organism | Vibrio owensii strain V180403 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3597315..3607830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0856_RS17460 (D0856_17460) | - | 3597413..3599983 (-) | 2571 | WP_041061315.1 | PBP1A family penicillin-binding protein | - |
| D0856_RS17465 (D0856_17465) | pilM | 3600162..3601178 (+) | 1017 | WP_045412016.1 | type IV pilus assembly protein PilM | Machinery gene |
| D0856_RS17470 (D0856_17470) | - | 3601162..3601739 (+) | 578 | Protein_3206 | PilN domain-containing protein | - |
| D0856_RS17475 (D0856_17475) | pilO | 3601732..3602325 (+) | 594 | WP_009705519.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| D0856_RS17480 (D0856_17480) | pilP | 3602315..3602830 (+) | 516 | WP_038896738.1 | pilus assembly protein PilP | Machinery gene |
| D0856_RS17485 (D0856_17485) | pilQ | 3602865..3604613 (+) | 1749 | WP_039988233.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| D0856_RS17490 (D0856_17490) | aroK | 3604803..3605321 (+) | 519 | WP_005438434.1 | shikimate kinase AroK | - |
| D0856_RS17495 (D0856_17495) | aroB | 3605353..3606453 (+) | 1101 | WP_122068744.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19040.16 Da Isoelectric Point: 10.2756
>NTDB_id=321845 D0856_RS17480 WP_038896738.1 3602315..3602830(+) (pilP) [Vibrio owensii strain V180403]
MRNKSLLMVCIAGALAGCQANDESLTDFIRGVENQARRDVAKLQPAEDYVVISYEPEILRAPFELPKEATIATQPLARQD
CWQPPSRKRVGKLERFPLNKLRLKGVMGMGSNVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLMVCIAGALAGCQANDESLTDFIRGVENQARRDVAKLQPAEDYVVISYEPEILRAPFELPKEATIATQPLARQD
CWQPPSRKRVGKLERFPLNKLRLKGVMGMGSNVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=321845 D0856_RS17480 WP_038896738.1 3602315..3602830(+) (pilP) [Vibrio owensii strain V180403]
ATGCGAAATAAATCTTTGCTGATGGTTTGTATTGCAGGGGCACTAGCGGGTTGCCAAGCCAACGATGAATCTCTGACAGA
CTTTATTCGTGGCGTAGAAAACCAAGCACGCCGTGACGTCGCCAAATTACAGCCCGCTGAAGACTATGTAGTCATCAGTT
ATGAGCCCGAAATTCTACGTGCGCCTTTTGAGCTCCCTAAAGAAGCCACCATCGCCACTCAACCTTTGGCCAGACAAGAT
TGTTGGCAACCGCCATCAAGAAAGCGGGTAGGTAAGTTAGAACGCTTTCCTCTCAATAAACTGCGCTTAAAAGGTGTTAT
GGGGATGGGGAGCAATGTTTCTGGTTTGGTCCAAGCACCAAATGGCACCGTTTATAAGGTGAAGCCGGGTCAGTACCTTG
GTCGTAACAATGGCAAGGTGACCCACGTATCCCACAACTATTTATTAATTAATGAAACCTTACCCGACGGTTTAGGGTGT
TGGCAAAAGCGCAAAGTTAAGTTGGCTTTGAGATAG
ATGCGAAATAAATCTTTGCTGATGGTTTGTATTGCAGGGGCACTAGCGGGTTGCCAAGCCAACGATGAATCTCTGACAGA
CTTTATTCGTGGCGTAGAAAACCAAGCACGCCGTGACGTCGCCAAATTACAGCCCGCTGAAGACTATGTAGTCATCAGTT
ATGAGCCCGAAATTCTACGTGCGCCTTTTGAGCTCCCTAAAGAAGCCACCATCGCCACTCAACCTTTGGCCAGACAAGAT
TGTTGGCAACCGCCATCAAGAAAGCGGGTAGGTAAGTTAGAACGCTTTCCTCTCAATAAACTGCGCTTAAAAGGTGTTAT
GGGGATGGGGAGCAATGTTTCTGGTTTGGTCCAAGCACCAAATGGCACCGTTTATAAGGTGAAGCCGGGTCAGTACCTTG
GTCGTAACAATGGCAAGGTGACCCACGTATCCCACAACTATTTATTAATTAATGAAACCTTACCCGACGGTTTAGGGTGT
TGGCAAAAGCGCAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
91.813 |
100 |
0.918 |
| pilP | Vibrio cholerae strain A1552 |
55.814 |
100 |
0.561 |