Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   D0856_RS00420 Genome accession   NZ_CP033144
Coordinates   79457..80074 (-) Length   205 a.a.
NCBI ID   WP_009707563.1    Uniprot ID   -
Organism   Vibrio owensii strain V180403     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 74457..85074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0856_RS00410 (D0856_00410) aceF 75549..77465 (+) 1917 WP_122067019.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  D0856_RS00415 (D0856_00415) lpdA 77709..79139 (+) 1431 WP_005438019.1 dihydrolipoyl dehydrogenase -
  D0856_RS00420 (D0856_00420) opaR 79457..80074 (-) 618 WP_009707563.1 transcriptional regulator OpaR Regulator
  D0856_RS00425 (D0856_00425) hpt 80395..80925 (+) 531 WP_005439354.1 hypoxanthine phosphoribosyltransferase -
  D0856_RS00430 (D0856_00430) can 81014..81682 (-) 669 WP_005439355.1 carbonate dehydratase -
  D0856_RS00435 (D0856_00435) - 81966..83636 (+) 1671 WP_020196604.1 SulP family inorganic anion transporter -
  D0856_RS00440 (D0856_00440) - 83873..84790 (+) 918 WP_005439357.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23710.99 Da        Isoelectric Point: 6.2211

>NTDB_id=321820 D0856_RS00420 WP_009707563.1 79457..80074(-) (opaR) [Vibrio owensii strain V180403]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELSTLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=321820 D0856_RS00420 WP_009707563.1 79457..80074(-) (opaR) [Vibrio owensii strain V180403]
ATGGACTCAATAGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCAGAGATCGCTCAAGTTTCTGTTGCGACGGTAT
TTAACTACTTCCCTACTCGTGAAGACTTAGTGGATGAAGTTTTGAACCACGTTGTTCGTCAATTCTCGAACTTCTTGTCT
GATAACATTGACTTAGACATCCATGCACGCGAGAACATCGCCAACATCACTAATGCAATGATTGAGTTAGTAAGCCAAGA
TTGCCATTGGCTGAAGGTTTGGTTTGAGTGGAGCGCATCAACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACAAATCAACTATTGGTGCAAAACATGTTCATCAAAGCGATCGAACGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATCTTCGTGCAAGCGAACCGCTCTAAGAGCGAAGCCGAGCTATC
AACACTCGTTAGTGCTTACCTAGATATGTTGTGCATCTACAACCGTGAGCATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment