Detailed information NTG0321791

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: FE252_RS11110
• Genome accession: NZ_CP040456
• Coordinates: 1994338..1995762 (-)
• Length: 474 a.a.
• NCBI ID: WP_000132557.1
• Uniprot ID: -
• Organism: Escherichia coli strain UPEC132
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1989338..2000762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FE252_RS11080	yeeZ	1989393..1990217 (+)	825	WP_000754734.1	SDR family oxidoreductase	-
FE252_RS11085	yeeY	1990263..1991192 (+)	930	WP_000803351.1	LysR substrate-binding domain-containing protein	-
FE252_RS11090	yoeI	1991407..1991469 (+)	63	WP_010723108.1	membrane protein YoeI	-
FE252_RS11095	plaP	1991459..1992817 (+)	1359	WP_000019197.1	putrescine/proton symporter PlaP	-
FE252_RS11100	tsuA	1992996..1994054 (+)	1059	WP_000492321.1	thiosulfate utilization transporter TsuA/YeeE	-
FE252_RS11105	tsuB	1994068..1994295 (+)	228	WP_000985267.1	thiosulfate utilization sulfurtransferase TsuB/YeeD	-
FE252_RS11110	sbcB	1994338..1995762 (-)	1425	WP_000132557.1	exodeoxyribonuclease I	Machinery gene
FE252_RS11115	-	1995944..1996999 (+)	1056	Protein_1864	integrase family protein	-
FE252_RS11120	-	1997072..1998192 (+)	1121	WP_085962473.1	IS3-like element ISSen4 family transposase	-
FE252_RS11125	-	1998518..1999681 (+)	1164	WP_231528257.1	hypothetical protein	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54353.62 Da
• Isoelectric Point: 5.3498

>NTDB_id=321791 FE252_RS11110 WP_000132557.1 1994338..1995762(-) (sbcB) [Escherichia coli strain UPEC132]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQIFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide

• Length: 1425 bp

>NTDB_id=321791 FE252_RS11110 WP_000132557.1 1994338..1995762(-) (sbcB) [Escherichia coli strain UPEC132]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGTGGC
AATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
AGCGATATTCGCGGAAGCCGAACCGTTTACACCTTCAGATAATGTGGATGCACAGCTTTATAATGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGAATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGATCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGTATG
CCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (211-471)

• Exonuclease (RNase_T) (12-187)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	58.936	99.156	0.584