Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   D0871_RS03490 Genome accession   NZ_CP033141
Coordinates   663442..664056 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 160807     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 658442..669056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS03480 (D0871_03480) aceF 659733..661619 (+) 1887 WP_069514828.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  D0871_RS03485 (D0871_03485) lpdA 661888..663315 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  D0871_RS03490 (D0871_03490) opaR 663442..664056 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  D0871_RS03495 (D0871_03495) hpt 664375..664905 (+) 531 WP_069514830.1 hypoxanthine phosphoribosyltransferase -
  D0871_RS03500 (D0871_03500) can 664979..665647 (-) 669 WP_005462578.1 carbonate dehydratase -
  D0871_RS03505 (D0871_03505) - 665931..667601 (+) 1671 WP_023624255.1 SulP family inorganic anion transporter -
  D0871_RS03515 (D0871_03515) - 667854..668771 (+) 918 WP_005462584.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=321789 D0871_RS03490 WP_005479697.1 663442..664056(-) (opaR) [Vibrio parahaemolyticus strain 160807]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=321789 D0871_RS03490 WP_005479697.1 663442..664056(-) (opaR) [Vibrio parahaemolyticus strain 160807]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGAGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701

Multiple sequence alignment