Detailed information NTG0321781

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D0871_RS03255
• Genome accession: NZ_CP033141
• Coordinates: 618546..619535 (+)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain 160807
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 613546..624535

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D0871_RS03220 (D0871_03220)	ftsB	613554..613835 (+)	282	WP_005455577.1	cell division protein FtsB	-
D0871_RS03225 (D0871_03225)	ispD	613837..614541 (+)	705	WP_069514569.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D0871_RS03230 (D0871_03230)	ispF	614559..615035 (+)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D0871_RS03235 (D0871_03235)	truD	615082..616125 (+)	1044	WP_069514566.1	tRNA pseudouridine(13) synthase TruD	-
D0871_RS03240 (D0871_03240)	surE	616125..616901 (+)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
D0871_RS03245 (D0871_03245)	-	616901..617527 (+)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D0871_RS03250 (D0871_03250)	-	617542..618465 (+)	924	WP_023623297.1	peptidoglycan DD-metalloendopeptidase family protein	-
D0871_RS03255 (D0871_03255)	rpoS	618546..619535 (+)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
D0871_RS03260 (D0871_03260)	mutS	619614..622175 (-)	2562	WP_024702355.1	DNA mismatch repair protein MutS	-
D0871_RS03265 (D0871_03265)	pncC	622260..622742 (+)	483	WP_021450025.1	nicotinamide-nucleotide amidase	-
D0871_RS03270 (D0871_03270)	recA	622943..623986 (+)	1044	WP_023623298.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=321781 D0871_RS03255 WP_005478537.1 618546..619535(+) (rpoS) [Vibrio parahaemolyticus strain 160807]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=321781 D0871_RS03255 WP_005478537.1 618546..619535(+) (rpoS) [Vibrio parahaemolyticus strain 160807]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTTCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTCGAAGATGTCAGCAAAATGTTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTCATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851