Detailed information
Bioinformatically predicted
Overview
| Name | pilP | Type | Machinery gene |
| Locus tag | D0871_RS02080 | Genome accession | NZ_CP033141 |
| Coordinates | 399087..399602 (+) | Length | 171 a.a. |
| NCBI ID | WP_025818422.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 160807 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 394087..404602
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0871_RS02060 (D0871_02060) | - | 394220..396790 (-) | 2571 | WP_029815565.1 | PBP1A family penicillin-binding protein | - |
| D0871_RS02065 (D0871_02065) | pilM | 396933..397949 (+) | 1017 | WP_069514340.1 | type IV pilus assembly protein PilM | Machinery gene |
| D0871_RS02070 (D0871_02070) | pilN | 397933..398511 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| D0871_RS02075 (D0871_02075) | pilO | 398504..399097 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| D0871_RS02080 (D0871_02080) | pilP | 399087..399602 (+) | 516 | WP_025818422.1 | pilus assembly protein PilP | Machinery gene |
| D0871_RS02085 (D0871_02085) | pilQ | 399634..401382 (+) | 1749 | WP_025818421.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| D0871_RS02090 (D0871_02090) | aroK | 401571..402089 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| D0871_RS02095 (D0871_02095) | aroB | 402121..403221 (+) | 1101 | WP_023622897.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 18901.07 Da Isoelectric Point: 10.5314
>NTDB_id=321774 D0871_RS02080 WP_025818422.1 399087..399602(+) (pilP) [Vibrio parahaemolyticus strain 160807]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGSTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGSTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR
Nucleotide
Download Length: 516 bp
>NTDB_id=321774 D0871_RS02080 WP_025818422.1 399087..399602(+) (pilP) [Vibrio parahaemolyticus strain 160807]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAGCACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTTGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGTCAGGCGCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAGCACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilP | Vibrio campbellii strain DS40M4 |
84.211 |
100 |
0.842 |
| pilP | Vibrio cholerae strain A1552 |
58.14 |
100 |
0.585 |