Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   FE252_RS05720 Genome accession   NZ_CP040456
Coordinates   862007..863197 (-) Length   396 a.a.
NCBI ID   WP_016238539.1    Uniprot ID   -
Organism   Escherichia coli strain UPEC132     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 857007..868197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE252_RS05710 - 859271..860308 (+) 1038 WP_016238543.1 glycosyltransferase family 1 protein -
  FE252_RS05715 - 860571..861264 (-) 694 Protein_825 IS1 family transposase -
  FE252_RS05720 kpsS 862007..863197 (-) 1191 WP_016238539.1 capsular biosynthesis protein Regulator
  FE252_RS05725 - 863232..865259 (-) 2028 WP_016238538.1 capsular polysaccharide biosynthesis protein -
  FE252_RS05730 kdsB 865256..865996 (-) 741 WP_016238537.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FE252_RS05735 - 866006..867682 (-) 1677 WP_001305965.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 396 a.a.        Molecular weight: 47335.65 Da        Isoelectric Point: 10.0561

>NTDB_id=321772 FE252_RS05720 WP_016238539.1 862007..863197(-) (kpsS) [Escherichia coli strain UPEC132]
MQGDTLTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPTPHVENFKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLDERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNATYYGIFSLRV

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=321772 FE252_RS05720 WP_016238539.1 862007..863197(-) (kpsS) [Escherichia coli strain UPEC132]
ATGCAAGGTGATACACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTCCCCGGATGGTTACGGGATCTCCACCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTAAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTACGCCGCACGTTGAGAACTTTAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGCCATGAGTTCCCTCGCTACCGCCACCATAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGCTGGACCAGCGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGTAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGATTGAGTAAGG
AATATGGCTTAGATGAGCGAGTTATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCATGCAAAAGCGGTAGTG
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAAGACGCAGGTTAATGCAACTTATTATGGAATTTTCTCACTCAGAGTATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.848

99.495

0.396

Multiple sequence alignment