Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   D0784_RS13350 Genome accession   NZ_CP033134
Coordinates   2854134..2854751 (+) Length   205 a.a.
NCBI ID   WP_005428669.1    Uniprot ID   A0AAQ2XXV5
Organism   Vibrio campbellii strain 170502     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849134..2859751
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS13330 (D0784_13325) - 2849417..2850334 (-) 918 WP_005531730.1 ABC transporter ATP-binding protein -
  D0784_RS13335 (D0784_13330) - 2850573..2852243 (-) 1671 WP_122020016.1 SulP family inorganic anion transporter -
  D0784_RS13340 (D0784_13335) can 2852527..2853195 (+) 669 WP_005531727.1 carbonate dehydratase -
  D0784_RS13345 (D0784_13340) hpt 2853282..2853812 (-) 531 WP_005428667.1 hypoxanthine phosphoribosyltransferase -
  D0784_RS13350 (D0784_13345) opaR 2854134..2854751 (+) 618 WP_005428669.1 transcriptional regulator OpaR Regulator
  D0784_RS13360 (D0784_13355) lpdA 2855163..2856593 (-) 1431 WP_005446266.1 dihydrolipoyl dehydrogenase -
  D0784_RS13365 (D0784_13360) aceF 2856837..2858696 (-) 1860 WP_122020018.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23738.02 Da        Isoelectric Point: 6.2211

>NTDB_id=321692 D0784_RS13350 WP_005428669.1 2854134..2854751(+) (opaR) [Vibrio campbellii strain 170502]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFIKAIERGEVCDQHEPE
HLANLFHGICYSIFVQANRSKSEAELTNLVSAYLDMLCIYNREHH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=321692 D0784_RS13350 WP_005428669.1 2854134..2854751(+) (opaR) [Vibrio campbellii strain 170502]
ATGGACTCAATTGCAAAGAGACCTCGTACTAGGCTTTCCCCTCTAAAACGTAAACAGCAACTGATGGAAATCGCTCTTGA
AGTGTTTGCTCGTCGCGGCATTGGCCGTGGTGGTCACGCGGATATTGCTGAGATCGCTCAAGTTTCTGTTGCGACAGTAT
TTAACTACTTCCCTACTCGTGAAGATTTGGTGGATGAAGTTCTGAACCACGTTGTGCGTCAGTTCTCTAACTTCTTGTCG
GATAACATCGACTTAGACATCCACGCGCGCGAAAACATCGCCAACATCACTAATGCAATGATTGAGCTAGTAAGCCAAGA
TTGCCATTGGCTGAAAGTTTGGTTTGAGTGGAGCGCATCGACACGTGATGAAGTATGGCCATTGTTCGTGACCACAAACC
GCACTAACCAACTTCTAGTGCAAAACATGTTCATCAAAGCGATCGAGCGTGGTGAAGTTTGTGACCAACATGAACCGGAA
CACTTGGCGAATCTGTTCCACGGTATTTGCTACTCTATTTTCGTACAAGCAAACCGCTCTAAGAGCGAAGCTGAGTTAAC
GAACCTAGTAAGTGCATACTTAGATATGCTATGCATCTACAACCGTGAACATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

96.078

99.512

0.956
  hapR Vibrio cholerae C6706

71.717

96.585

0.693
  hapR Vibrio cholerae strain A1552

71.717

96.585

0.693

Multiple sequence alignment