Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CDG68_RS19645 Genome accession   NZ_CP033133
Coordinates   3497040..3497723 (+) Length   227 a.a.
NCBI ID   WP_087553096.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3486791..3502626 3497040..3497723 within 0


Gene organization within MGE regions


Location: 3486791..3502626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS19605 (CDG68_19610) plsB 3487466..3490048 (+) 2583 WP_087554094.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  CDG68_RS19610 (CDG68_19615) - 3490295..3490861 (-) 567 WP_108675453.1 IS630 family transposase -
  CDG68_RS19615 (CDG68_19620) - 3490851..3491306 (-) 456 WP_004647755.1 helix-turn-helix domain-containing protein -
  CDG68_RS19620 (CDG68_19625) - 3491324..3492592 (-) 1269 WP_087554621.1 hypothetical protein -
  CDG68_RS19625 (CDG68_19630) - 3492621..3493043 (-) 423 Protein_3245 SDR family NAD(P)-dependent oxidoreductase -
  CDG68_RS19635 (CDG68_19640) - 3494279..3494635 (-) 357 Protein_3247 NAD(P)H-binding protein -
  CDG68_RS19640 (CDG68_19645) recG 3494695..3496740 (+) 2046 WP_087553095.1 ATP-dependent DNA helicase RecG -
  CDG68_RS19645 (CDG68_19650) comF 3497040..3497723 (+) 684 WP_087553096.1 ComF family protein Machinery gene
  CDG68_RS19650 (CDG68_19655) - 3497720..3498112 (-) 393 WP_087553097.1 NUDIX hydrolase -
  CDG68_RS19655 (CDG68_19660) - 3498211..3498801 (-) 591 WP_087553098.1 TIGR00730 family Rossman fold protein -
  CDG68_RS19660 (CDG68_19665) - 3498960..3499973 (+) 1014 WP_087553099.1 magnesium and cobalt transport protein CorA -
  CDG68_RS19665 (CDG68_19670) - 3500086..3500373 (-) 288 WP_087553100.1 toluene tolerance protein -
  CDG68_RS19670 (CDG68_19675) - 3500401..3501024 (-) 624 WP_087553101.1 phospholipid-binding protein MlaC -
  CDG68_RS19675 (CDG68_19680) - 3501046..3501726 (-) 681 WP_068975213.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CDG68_RS19680 (CDG68_19685) mlaE 3501726..3502505 (-) 780 WP_087553102.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26278.29 Da        Isoelectric Point: 6.9435

>NTDB_id=321664 CDG68_RS19645 WP_087553096.1 3497040..3497723(+) (comF) [Acinetobacter wuhouensis strain WCHAW010062]
MLSFINQLLHKSVQSISPCLLCGIDRQQQHSLCNDCWEQLPWYKQDIERHEHSILCAHHYDFPIDRIIQTYKYEQQLQYQ
NLLAHSLLNLRIPKVHAIVPMPISTERLIERGYNQMLIIANIMAKELKIPVWQPVIRAAQYSQKGLSRIERLENIEDQFQ
IITTEKRKYKKVLIIDDVVTTGSSIHALSQALEKLGCQQIYTACIAAGGIKQSSQLEESEIDAQENN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=321664 CDG68_RS19645 WP_087553096.1 3497040..3497723(+) (comF) [Acinetobacter wuhouensis strain WCHAW010062]
ATGCTCTCATTCATCAATCAACTACTCCACAAAAGCGTACAAAGCATCTCCCCTTGCCTACTCTGTGGCATCGACCGCCA
ACAACAGCATTCACTTTGTAACGATTGCTGGGAACAATTGCCGTGGTACAAACAAGACATCGAACGTCATGAACACAGCA
TACTTTGCGCACATCATTACGACTTCCCGATTGATCGAATTATCCAAACCTACAAATACGAACAGCAACTACAATATCAA
AACCTACTCGCACATAGCCTACTCAATTTAAGAATTCCTAAAGTTCACGCCATTGTCCCGATGCCTATTTCCACAGAACG
ATTAATCGAGCGTGGCTATAACCAAATGCTGATCATTGCCAACATCATGGCAAAAGAACTGAAAATTCCTGTATGGCAAC
CCGTGATTCGAGCAGCACAGTATTCACAAAAAGGCTTAAGCCGGATCGAACGACTGGAAAATATTGAAGATCAATTTCAA
ATTATTACGACCGAAAAAAGAAAATATAAAAAAGTACTGATTATTGATGATGTAGTCACAACAGGAAGTTCGATTCATGC
ACTGAGCCAAGCTTTAGAAAAACTCGGCTGTCAGCAGATTTATACCGCATGCATTGCAGCAGGGGGAATTAAACAATCAT
CTCAACTTGAAGAATCAGAAATCGATGCACAAGAAAATAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

61.429

92.511

0.568
  comF Acinetobacter baumannii D1279779

60.952

92.511

0.564

Multiple sequence alignment