Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   CDG68_RS10885 Genome accession   NZ_CP033133
Coordinates   1687956..1688336 (+) Length   126 a.a.
NCBI ID   WP_087553051.1    Uniprot ID   A0A3G2T1K2
Organism   Acinetobacter wuhouensis strain WCHAW010062     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1682956..1693336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG68_RS10855 (CDG68_10860) kdsB 1683702..1684463 (+) 762 WP_087553057.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CDG68_RS10860 (CDG68_10865) - 1684540..1685520 (+) 981 WP_087553056.1 DNA polymerase III subunit delta' -
  CDG68_RS10865 (CDG68_10870) - 1685558..1685899 (+) 342 WP_087553055.1 PilZ domain-containing protein -
  CDG68_RS10870 (CDG68_10875) - 1685938..1686711 (+) 774 WP_087553054.1 TatD family hydrolase -
  CDG68_RS10875 (CDG68_10880) - 1686783..1687397 (+) 615 WP_087553053.1 TetR/AcrR family transcriptional regulator -
  CDG68_RS10880 (CDG68_10885) - 1687403..1687969 (+) 567 WP_087553052.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CDG68_RS10885 (CDG68_10890) xcpV 1687956..1688336 (+) 381 WP_087553051.1 type II secretion system minor pseudopilin GspI Machinery gene
  CDG68_RS10890 (CDG68_10895) xcpW 1688384..1688995 (+) 612 WP_087553050.1 type II secretion system minor pseudopilin GspJ Machinery gene
  CDG68_RS10895 (CDG68_10900) gspK 1689045..1690007 (+) 963 WP_087553049.1 type II secretion system minor pseudopilin GspK -
  CDG68_RS10900 (CDG68_10905) - 1690231..1690827 (+) 597 WP_087553048.1 6-pyruvoyl trahydropterin synthase family protein -
  CDG68_RS10905 (CDG68_10910) ung 1690900..1691613 (+) 714 WP_068973184.1 uracil-DNA glycosylase -
  CDG68_RS10910 (CDG68_10915) - 1691610..1692731 (+) 1122 WP_068973183.1 enoyl-CoA hydratase/isomerase family protein -
  CDG68_RS10915 (CDG68_10920) tadA 1692737..1693279 (+) 543 WP_087553047.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13892.21 Da        Isoelectric Point: 9.8980

>NTDB_id=321653 CDG68_RS10885 WP_087553051.1 1687956..1688336(+) (xcpV) [Acinetobacter wuhouensis strain WCHAW010062]
MKKNKAFTLIEVVVALAIFAVAAMALTKVAMQYTQSTANSILRTKAQFVAQNEISRMIINHERLTGTASKQITAQGETWQ
IDKKAEATISPLVQKIDVQVSLFDPDAGKVEAGITNMVFFNYVIKE

Nucleotide


Download         Length: 381 bp        

>NTDB_id=321653 CDG68_RS10885 WP_087553051.1 1687956..1688336(+) (xcpV) [Acinetobacter wuhouensis strain WCHAW010062]
ATGAAGAAAAATAAAGCCTTTACCTTAATCGAAGTTGTGGTCGCTTTGGCGATCTTTGCTGTTGCAGCGATGGCATTAAC
CAAAGTAGCGATGCAATATACCCAATCGACTGCCAATTCGATTTTAAGAACCAAAGCACAATTTGTTGCGCAGAATGAAA
TTTCTCGGATGATCATTAACCATGAAAGGTTAACTGGGACAGCATCAAAACAAATTACGGCACAAGGTGAGACGTGGCAG
ATTGATAAAAAAGCAGAAGCGACGATTAGCCCTTTGGTGCAGAAAATAGATGTACAAGTCAGTTTGTTCGATCCTGATGC
AGGCAAAGTCGAAGCGGGAATTACCAATATGGTGTTTTTTAATTATGTGATTAAAGAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type II secretion system (T2SS), protein I (T2SSI)

(43-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2T1K2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.61

97.619

0.738

Multiple sequence alignment