Detailed information NTG0321409

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: EAW52_RS14820
• Genome accession: NZ_CP033105
• Coordinates: 3162351..3164582 (-)
• Length: 743 a.a.
• NCBI ID: WP_122043064.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LTJR-52
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3157351..3169582

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAW52_RS14785 (EAW52_14785)	murB	3157771..3158796 (-)	1026	WP_122043059.1	UDP-N-acetylmuramate dehydrogenase	-
EAW52_RS14790 (EAW52_14790)	-	3158777..3159256 (-)	480	WP_122043060.1	low molecular weight protein-tyrosine-phosphatase	-
EAW52_RS14795 (EAW52_14795)	kdsB	3159256..3160023 (-)	768	WP_122043061.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
EAW52_RS14800 (EAW52_14800)	-	3160020..3160205 (-)	186	WP_122043062.1	Trm112 family protein	-
EAW52_RS14805 (EAW52_14805)	lpxK	3160231..3161229 (-)	999	WP_122043063.1	tetraacyldisaccharide 4'-kinase	-
EAW52_RS14810 (EAW52_14810)	-	3161226..3161666 (-)	441	WP_010797717.1	biopolymer transporter ExbD	-
EAW52_RS14815 (EAW52_14815)	exbB	3161663..3162301 (-)	639	WP_019365918.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
EAW52_RS14820 (EAW52_14820)	comA	3162351..3164582 (-)	2232	WP_122043064.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
EAW52_RS14825 (EAW52_14825)	lolD	3164639..3165322 (-)	684	WP_010797714.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
EAW52_RS14830 (EAW52_14830)	-	3165315..3166559 (-)	1245	WP_122043065.1	lipoprotein-releasing ABC transporter permease subunit	-
EAW52_RS14835 (EAW52_14835)	lolD	3166594..3167277 (-)	684	WP_019365915.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
EAW52_RS14840 (EAW52_14840)	-	3167270..3168526 (-)	1257	WP_122043066.1	lipoprotein-releasing ABC transporter permease subunit	-
EAW52_RS14845 (EAW52_14845)	-	3168768..3169343 (+)	576	WP_122043067.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 80571.30 Da
• Isoelectric Point: 9.3304

>NTDB_id=321409 EAW52_RS14820 WP_122043064.1 3162351..3164582(-) (comA) [Pseudomonas sp. LTJR-52]
MRTGIVAFIAGLLVLRFLPELPDREVLVACLIVAFGLMFLPRVYVAGAFLIGFGWACLSAHWALDERLDDGLDGRIVWLE
GTVVGLPELREGSTRFLLENAQSRRGALPSRIRVSWSNAPAVRSGEQWRLAVELQKPGGLHNLRGMDGEAWMLAHRIGAS
GVVKAGQRLSRQATLDAWRDALRQRLLHLDAFQRNGGLAALVLGDGSGVSTQDWQLLQATGTTHLMVISGQHITLLSGFV
FALIAGLARLGYWPVRIPWFPVACLSALVSAIGYGFLAGFDVPVRRACIMIALITLWRLRFRHLGAWVPVGIALAAVLVA
EPLASLTAGFWLSFIAVGLLIWIFGGRLGQWSPWRSWGRAQWMMAVGLAPVLLALDLPVSLSGPIANLVAVPWVDFLVVP
AALLGTVSLLIIPPLGELLLWCSGATLDGLFAFLGYVSALVPAWQGAWVPAWAVALGMLGVLLWLAPDGVPVRPLAVFLL
IPLFWPPVTRPASGLAKVTVLDVGQGLSVFIQTKGHAMLYDAGPLSGSYDAGERVVVPNLKATGVSHLDMMLVSHGDADH
AGGAAAVFSALKVDKVVSGEVKRLPAGLHPTPCEDNQRWVWEGVLFTVWQPSPLMKGNAASCVLMVEAAGEHLLLTGDID
EKAERRLVESGRDIRAQWLLAPHHGSRTASSERFVSLVKPEYALISRGIHNNFGHPHAQVISRYERHGVRIYDTALSGAI
SFTLGKHDLPQGARQKRYFWQEK

Nucleotide

• Length: 2232 bp

>NTDB_id=321409 EAW52_RS14820 WP_122043064.1 3162351..3164582(-) (comA) [Pseudomonas sp. LTJR-52]
ATGCGCACAGGGATCGTTGCGTTTATTGCAGGCCTATTGGTGCTGCGCTTTCTACCCGAATTGCCTGATCGAGAGGTTCT
TGTTGCCTGCTTGATAGTGGCATTCGGTCTGATGTTCCTGCCCCGTGTCTACGTGGCAGGTGCCTTCTTGATAGGCTTTG
GCTGGGCCTGCCTGTCGGCTCATTGGGCGCTGGATGAGCGACTGGATGATGGTCTGGACGGACGAATAGTCTGGCTTGAG
GGAACAGTTGTAGGGCTTCCTGAGTTGCGCGAAGGTTCGACGCGTTTTCTTTTGGAAAATGCGCAGAGCCGTCGAGGGGC
TTTACCAAGCCGTATCCGGGTCTCCTGGTCAAATGCGCCAGCCGTACGATCAGGTGAGCAATGGCGTCTCGCTGTAGAAT
TGCAAAAGCCGGGCGGGCTCCACAATCTCCGGGGAATGGATGGCGAAGCCTGGATGCTGGCTCATCGAATCGGTGCAAGC
GGTGTCGTTAAGGCAGGGCAACGACTTTCCCGTCAGGCCACCTTGGATGCCTGGCGAGACGCATTAAGGCAGCGGTTATT
GCATCTTGACGCCTTTCAGCGAAACGGTGGGCTGGCTGCATTGGTTCTGGGCGATGGCTCAGGCGTTTCGACTCAGGATT
GGCAGCTTTTACAGGCTACAGGCACTACGCATCTGATGGTTATTTCCGGTCAGCACATTACGCTGCTTTCGGGATTTGTA
TTTGCGCTGATCGCCGGATTGGCGCGTCTGGGCTACTGGCCTGTCCGGATACCGTGGTTTCCTGTTGCTTGCCTGTCTGC
GCTTGTATCGGCGATAGGATACGGATTTCTGGCAGGCTTTGACGTTCCTGTAAGACGAGCCTGCATCATGATCGCGCTGA
TTACACTATGGCGATTACGGTTTCGTCACCTGGGGGCATGGGTACCGGTAGGTATTGCCTTGGCGGCTGTGCTGGTGGCT
GAGCCGCTGGCAAGCCTTACGGCAGGCTTTTGGTTGTCTTTTATCGCTGTAGGTCTCTTGATATGGATCTTTGGCGGCCG
TTTGGGTCAATGGAGTCCTTGGCGCAGTTGGGGGCGGGCCCAATGGATGATGGCAGTCGGGCTAGCGCCGGTTTTACTGG
CTCTGGATCTGCCTGTCAGTCTGTCGGGGCCGATCGCTAACCTTGTTGCCGTGCCTTGGGTAGACTTTTTAGTGGTGCCA
GCCGCCTTGCTGGGTACCGTGTCTCTTCTGATTATTCCTCCCCTAGGCGAGTTGCTACTGTGGTGTTCAGGCGCGACCCT
TGATGGTTTATTCGCATTTCTCGGGTACGTGTCGGCACTGGTTCCTGCGTGGCAGGGAGCATGGGTGCCTGCGTGGGCTG
TCGCTTTAGGCATGCTGGGTGTGTTGCTATGGCTGGCTCCCGATGGGGTGCCGGTCAGGCCTTTGGCAGTATTTCTGCTG
ATTCCGTTGTTCTGGCCGCCAGTGACCCGACCAGCGTCAGGACTGGCAAAGGTAACCGTGCTCGACGTCGGACAGGGGTT
GTCTGTATTCATACAGACCAAAGGCCACGCCATGCTATACGACGCCGGGCCGCTTAGCGGAAGCTATGATGCTGGCGAAA
GGGTGGTAGTCCCCAACCTGAAAGCTACAGGCGTCAGTCATCTAGACATGATGTTGGTCAGTCATGGGGACGCAGATCAT
GCAGGAGGCGCCGCTGCTGTTTTCAGTGCCTTGAAAGTGGACAAGGTGGTGAGCGGGGAAGTGAAGCGGCTTCCTGCGGG
CTTGCATCCGACACCCTGCGAAGATAATCAGCGCTGGGTGTGGGAGGGAGTCTTATTTACTGTCTGGCAGCCTAGCCCCT
TGATGAAGGGAAACGCTGCATCGTGCGTGCTGATGGTAGAAGCAGCAGGTGAGCACCTTTTGCTAACCGGTGATATAGAC
GAAAAGGCCGAGCGTCGCCTCGTTGAATCTGGGCGGGATATACGGGCTCAATGGTTATTGGCACCTCATCATGGCAGCCG
AACGGCGTCGAGCGAGCGTTTCGTCAGTCTGGTAAAACCTGAATATGCCTTGATCTCGAGGGGAATTCACAACAACTTTG
GCCATCCACATGCACAAGTGATCAGTCGTTATGAACGTCATGGCGTCCGGATTTACGATACAGCCTTGAGCGGTGCAATA
TCATTTACCCTCGGTAAGCATGATTTGCCGCAAGGCGCTCGTCAGAAGCGTTATTTTTGGCAAGAAAAATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-686)

• Competence protein (Competence) (201-464)

• Domain of unknown function (DUF4131) (DUF4131) (27-168)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	55.712	95.424	0.532