Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   EAW52_RS14815 Genome accession   NZ_CP033105
Coordinates   3161663..3162301 (-) Length   212 a.a.
NCBI ID   WP_019365918.1    Uniprot ID   -
Organism   Pseudomonas sp. LTJR-52     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3156663..3167301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAW52_RS14785 (EAW52_14785) murB 3157771..3158796 (-) 1026 WP_122043059.1 UDP-N-acetylmuramate dehydrogenase -
  EAW52_RS14790 (EAW52_14790) - 3158777..3159256 (-) 480 WP_122043060.1 low molecular weight protein-tyrosine-phosphatase -
  EAW52_RS14795 (EAW52_14795) kdsB 3159256..3160023 (-) 768 WP_122043061.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  EAW52_RS14800 (EAW52_14800) - 3160020..3160205 (-) 186 WP_122043062.1 Trm112 family protein -
  EAW52_RS14805 (EAW52_14805) lpxK 3160231..3161229 (-) 999 WP_122043063.1 tetraacyldisaccharide 4'-kinase -
  EAW52_RS14810 (EAW52_14810) - 3161226..3161666 (-) 441 WP_010797717.1 biopolymer transporter ExbD -
  EAW52_RS14815 (EAW52_14815) exbB 3161663..3162301 (-) 639 WP_019365918.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  EAW52_RS14820 (EAW52_14820) comA 3162351..3164582 (-) 2232 WP_122043064.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  EAW52_RS14825 (EAW52_14825) lolD 3164639..3165322 (-) 684 WP_010797714.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  EAW52_RS14830 (EAW52_14830) - 3165315..3166559 (-) 1245 WP_122043065.1 lipoprotein-releasing ABC transporter permease subunit -
  EAW52_RS14835 (EAW52_14835) lolD 3166594..3167277 (-) 684 WP_019365915.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23186.34 Da        Isoelectric Point: 6.2585

>NTDB_id=321408 EAW52_RS14815 WP_019365918.1 3161663..3162301(-) (exbB) [Pseudomonas sp. LTJR-52]
MFELVKAGGWMMLPIILSSIVGMAIVAERLWTLRRARVVPPQLLAQVWKWLQDNSLTSEKLKELRANSPLGEVMAAGLAN
SRHGREVMKEAIEEAGSRIVHDLERYLNTLGTIAAMAPLMGLLGTVFGMIEIFSSFMESGLANAPVLAGGISKALLTTAA
GLIVAIPAVFFHRFLLRRVDELIVSMEQESIKLVEVVQGDREVDFVTEGTKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=321408 EAW52_RS14815 WP_019365918.1 3161663..3162301(-) (exbB) [Pseudomonas sp. LTJR-52]
GTGTTCGAACTGGTCAAAGCAGGCGGCTGGATGATGCTGCCAATTATTCTGAGTTCTATTGTAGGCATGGCTATCGTAGC
CGAGCGGTTATGGACACTGCGCCGTGCACGTGTCGTTCCGCCGCAACTGTTGGCTCAGGTATGGAAGTGGCTGCAAGATA
ATTCGCTCACAAGCGAGAAGCTTAAGGAGTTGCGCGCCAATTCGCCTTTGGGTGAGGTAATGGCTGCAGGGCTTGCCAAT
TCCCGTCATGGCCGTGAAGTCATGAAAGAGGCCATTGAAGAGGCTGGTAGCCGCATCGTGCATGATCTGGAGCGCTATCT
GAATACCCTGGGTACGATTGCTGCCATGGCACCCTTGATGGGACTGCTAGGCACGGTGTTTGGCATGATCGAGATCTTCA
GCTCTTTCATGGAAAGCGGTCTGGCCAACGCTCCGGTTCTGGCTGGCGGTATTTCCAAGGCCTTGCTGACCACGGCGGCT
GGTCTGATCGTGGCTATTCCTGCCGTATTCTTCCATCGCTTCCTGCTGCGTCGTGTCGATGAACTGATTGTCTCTATGGA
ACAAGAGTCCATCAAGCTGGTTGAAGTCGTTCAGGGTGATCGTGAAGTAGACTTCGTCACGGAAGGTACCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

76.098

96.698

0.736

Multiple sequence alignment