Detailed information NTG0321389

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D8767_RS25695
• Genome accession: NZ_CP033104
• Coordinates: 5442183..5443049 (+)
• Length: 288 a.a.
• NCBI ID: WP_016713385.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LTGT-11-2Z
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5437183..5448049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8767_RS25660 (D8767_25660)	-	5437373..5438017 (+)	645	WP_122048457.1	tail assembly protein	-
D8767_RS29400	-	5438026..5438391 (-)	366	WP_256658601.1	DUF4145 domain-containing protein	-
D8767_RS25670 (D8767_25670)	-	5438850..5439461 (+)	612	WP_122048459.1	recombinase family protein	-
D8767_RS25675 (D8767_25675)	-	5439480..5440031 (+)	552	WP_043860330.1	hypothetical protein	-
D8767_RS25685 (D8767_25685)	-	5440345..5440755 (-)	411	WP_016713383.1	pilin	-
D8767_RS25690 (D8767_25690)	-	5440972..5442180 (+)	1209	WP_016713384.1	type II secretion system F family protein	-
D8767_RS25695 (D8767_25695)	pilD	5442183..5443049 (+)	867	WP_016713385.1	A24 family peptidase	Machinery gene
D8767_RS25700 (D8767_25700)	coaE	5443049..5443672 (+)	624	WP_016713386.1	dephospho-CoA kinase	-
D8767_RS25705 (D8767_25705)	yacG	5443669..5443869 (+)	201	WP_016484797.1	DNA gyrase inhibitor YacG	-
D8767_RS25710 (D8767_25710)	-	5443923..5444630 (-)	708	WP_016713387.1	energy-coupling factor ABC transporter permease	-
D8767_RS25715 (D8767_25715)	-	5444717..5445148 (+)	432	WP_016713388.1	hypothetical protein	-
D8767_RS25720 (D8767_25720)	-	5445204..5445833 (+)	630	WP_013970766.1	DUF1780 domain-containing protein	-
D8767_RS25725 (D8767_25725)	-	5445966..5446139 (+)	174	WP_013970765.1	DUF3094 family protein	-
D8767_RS25730 (D8767_25730)	-	5446224..5447519 (+)	1296	WP_016713389.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31975.19 Da
• Isoelectric Point: 7.3029

>NTDB_id=321389 D8767_RS25695 WP_016713385.1 5442183..5443049(+) (pilD) [Pseudomonas sp. LTGT-11-2Z]
MTLWTLLAEQPAYFLTLATLLGLLVGSFLNVLVYRLPIMLERQWQREAQEVLGLPVTQHERFDLCLPASRCPHCAHQIRA
WENIPVISYLALRGHCSACKTRISPRYPMVEIASALLSLVVAWRFGASVEALLALPLTWCLLALSLIDAEHQLLPDVLVL
PMLWLGLIVNAFNLYAPLTDALWGAVAGYLSLWTVYWVFKLVTGKEGMGYGDFKLMALIGAWGGWQVLPLTLLLSSVVGA
LVGLCLLRLRRHAMGTAMPFGPYLAIAGWIAVLWGDEIVASYMQLLGY

Nucleotide

• Length: 867 bp

>NTDB_id=321389 D8767_RS25695 WP_016713385.1 5442183..5443049(+) (pilD) [Pseudomonas sp. LTGT-11-2Z]
ATGACTTTATGGACTTTGCTGGCAGAGCAGCCGGCGTACTTCCTCACCCTGGCCACGCTGCTCGGCCTGTTGGTGGGCAG
TTTTCTGAATGTGCTGGTGTATCGGCTGCCGATCATGCTGGAGCGGCAATGGCAGCGTGAGGCACAAGAAGTGTTGGGGT
TGCCGGTTACGCAGCACGAACGGTTCGACCTGTGCCTGCCCGCCTCCCGCTGCCCACATTGCGCGCATCAGATTCGCGCG
TGGGAGAACATTCCGGTTATCAGTTACCTGGCATTGCGCGGGCATTGCTCAGCCTGCAAAACCCGTATCAGCCCGCGCTA
CCCGATGGTGGAAATCGCCAGCGCGCTGCTGTCGCTGGTGGTGGCGTGGCGTTTTGGCGCTTCGGTAGAGGCGTTGCTGG
CACTGCCACTGACCTGGTGCCTGCTGGCCCTGAGCCTGATCGATGCAGAACACCAATTGCTGCCGGATGTGCTGGTGCTG
CCGATGCTGTGGCTGGGGCTGATCGTCAATGCTTTCAACCTGTACGCCCCGCTAACCGACGCGCTGTGGGGCGCGGTGGC
CGGGTACCTCAGCCTGTGGACGGTGTACTGGGTGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTATGGCGACTTCA
AGCTGATGGCGCTGATCGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTGACGTTGTTGCTGTCATCGGTGGTGGGTGCG
CTGGTTGGCCTGTGCCTGCTGCGTTTGCGCCGGCATGCCATGGGCACGGCGATGCCGTTCGGGCCTTATCTGGCGATTGC
GGGGTGGATTGCCGTGCTCTGGGGTGATGAAATAGTCGCCTCTTACATGCAACTGCTTGGATACTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.43	96.181	0.514
pilD	Acinetobacter baumannii D1279779	51.246	97.569	0.5
pilD	Acinetobacter nosocomialis M2	51.88	92.361	0.479
pilD	Vibrio campbellii strain DS40M4	48.561	96.528	0.469
pilD	Neisseria gonorrhoeae MS11	48.507	93.056	0.451