Detailed information
Bioinformatically predicted
Overview
| Name | comGD | Type | Machinery gene |
| Locus tag | EAH52_RS13095 | Genome accession | NZ_CP033098 |
| Coordinates | 1273122..1273514 (+) | Length | 130 a.a. |
| NCBI ID | WP_255266366.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain SWO | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1268122..1278514
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAH52_RS06285 | - | 1268570..1268773 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EAH52_RS06290 | - | 1268770..1269756 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EAH52_RS06295 | - | 1269756..1270079 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EAH52_RS06300 | - | 1270083..1270706 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EAH52_RS06305 | comGA | 1270753..1271727 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EAH52_RS06310 | comGB | 1271699..1272766 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EAH52_RS06315 | comGC | 1272779..1273096 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EAH52_RS13095 | comGD | 1273122..1273514 (+) | 393 | WP_255266366.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EAH52_RS06325 | - | 1273712..1274209 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EAH52_RS06335 | - | 1274368..1274886 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| EAH52_RS06340 | gcvT | 1275058..1276149 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EAH52_RS06345 | gcvPA | 1276168..1277517 (+) | 1350 | WP_015364973.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 15059.95 Da Isoelectric Point: 10.5984
>NTDB_id=321348 EAH52_RS13095 WP_255266366.1 1273122..1273514(+) (comGD) [Staphylococcus warneri strain SWO]
MVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHINVKEEHGKKYQIKIKDG
KIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
MVLFILSILLLCTLSSKNLLTLSMSNDEMNINLLITQLNYIKSKAISEKQSITLMFNHQSSHINVKEEHGKKYQIKIKDG
KIIKITKINLITFDKNGNVNHFGSLNIKMKHSIYKVIFHIEKGRIRYTKL
Nucleotide
Download Length: 393 bp
>NTDB_id=321348 EAH52_RS13095 WP_255266366.1 1273122..1273514(+) (comGD) [Staphylococcus warneri strain SWO]
ATGGTATTATTCATTTTGTCTATACTATTGTTGTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGA
TGAAATGAATATTAATCTACTAATAACTCAATTGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTT
TAATGTTTAATCATCAATCTTCTCATATAAATGTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGG
AAGATCATAAAGATAACGAAAATAAATCTAATTACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATAT
AAAAATGAAACATTCAATATACAAAGTCATATTTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
ATGGTATTATTCATTTTGTCTATACTATTGTTGTGTACTTTAAGCAGTAAAAATCTTTTAACATTATCAATGTCTAATGA
TGAAATGAATATTAATCTACTAATAACTCAATTGAATTATATAAAATCAAAAGCAATTAGCGAAAAACAATCAATCACTT
TAATGTTTAATCATCAATCTTCTCATATAAATGTTAAAGAAGAACATGGTAAAAAGTATCAAATAAAAATAAAAGATGGG
AAGATCATAAAGATAACGAAAATAAATCTAATTACCTTTGATAAAAATGGCAATGTTAATCATTTTGGTTCGTTAAATAT
AAAAATGAAACATTCAATATACAAAGTCATATTTCATATTGAGAAAGGACGAATAAGGTATACCAAACTATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGD | Staphylococcus aureus MW2 |
49.231 |
100 |
0.492 |
| comGD | Staphylococcus aureus N315 |
49.231 |
100 |
0.492 |