Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | EAH52_RS06305 | Genome accession | NZ_CP033098 |
| Coordinates | 1270753..1271727 (+) | Length | 324 a.a. |
| NCBI ID | WP_002465784.1 | Uniprot ID | - |
| Organism | Staphylococcus warneri strain SWO | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1265753..1276727
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EAH52_RS06270 | rpmG | 1266194..1266343 (+) | 150 | WP_002451882.1 | 50S ribosomal protein L33 | - |
| EAH52_RS06275 | - | 1266575..1267129 (+) | 555 | WP_015364967.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| EAH52_RS06280 | - | 1267126..1268580 (+) | 1455 | WP_015364968.1 | rhomboid family intramembrane serine protease | - |
| EAH52_RS06285 | - | 1268570..1268773 (+) | 204 | WP_002451885.1 | YqgQ family protein | - |
| EAH52_RS06290 | - | 1268770..1269756 (+) | 987 | WP_002465775.1 | ROK family glucokinase | - |
| EAH52_RS06295 | - | 1269756..1270079 (+) | 324 | WP_015364969.1 | MTH1187 family thiamine-binding protein | - |
| EAH52_RS06300 | - | 1270083..1270706 (+) | 624 | WP_002465751.1 | MBL fold metallo-hydrolase | - |
| EAH52_RS06305 | comGA | 1270753..1271727 (+) | 975 | WP_002465784.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EAH52_RS06310 | comGB | 1271699..1272766 (+) | 1068 | WP_002465743.1 | competence type IV pilus assembly protein ComGB | - |
| EAH52_RS06315 | comGC | 1272779..1273096 (+) | 318 | WP_002465742.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EAH52_RS13095 | comGD | 1273122..1273514 (+) | 393 | WP_255266366.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| EAH52_RS06325 | - | 1273712..1274209 (+) | 498 | WP_002465737.1 | competence type IV pilus minor pilin ComGF | - |
| EAH52_RS06335 | - | 1274368..1274886 (+) | 519 | WP_037539765.1 | shikimate kinase | - |
| EAH52_RS06340 | gcvT | 1275058..1276149 (+) | 1092 | WP_002465750.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37163.35 Da Isoelectric Point: 9.2695
>NTDB_id=321333 EAH52_RS06305 WP_002465784.1 1270753..1271727(+) (comGA) [Staphylococcus warneri strain SWO]
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
MKILFQEIINKAIVYKASDVHFIPMEHYVHIKFRVNDTLTSYETLDIGIYRKLLVFMKFQAGLDVSTQQIAQSGRYTYKL
RSVYYLRISTLPLSIGSESCVIRIVPQYFQNKKETYEFNDFKHLMNKKQGLLLFTGPTGSGKSTLMYQMVMYAQKELNLN
VISIEDPVEQILKGITQISVNTKAGITYASSFKAILRCDPDVILIGEIRDAEIAKYVFQASLSGHLVLSTLHANDCKGAL
LRLLEMGITIQELSQAINLISNQRLITTSSQRRQLVCELMFKNQINYFFEHNQTMPRSFKRLSSKLDDMTKEGIICETIA
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=321333 EAH52_RS06305 WP_002465784.1 1270753..1271727(+) (comGA) [Staphylococcus warneri strain SWO]
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCATTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGACTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
TTGAAGATATTATTTCAAGAAATAATTAATAAAGCTATAGTTTATAAAGCAAGTGATGTACATTTTATTCCAATGGAACA
TTATGTTCATATAAAATTCAGAGTGAATGATACTTTAACATCATATGAAACTCTTGATATCGGAATTTATCGTAAATTAC
TTGTTTTTATGAAATTTCAAGCAGGATTGGATGTGTCGACGCAGCAAATCGCTCAAAGTGGTCGTTACACATATAAATTA
AGATCAGTTTATTACTTACGTATTTCAACTCTCCCTTTATCAATCGGTAGTGAAAGTTGTGTAATTAGAATAGTGCCTCA
ATATTTTCAAAATAAAAAGGAAACTTATGAATTTAACGATTTTAAACATTTAATGAATAAGAAACAAGGATTATTGCTTT
TTACAGGACCAACTGGTTCAGGTAAAAGCACACTCATGTATCAAATGGTTATGTACGCGCAAAAAGAATTGAATCTCAAT
GTCATATCTATCGAAGACCCCGTAGAACAAATTTTAAAAGGTATTACTCAAATCTCAGTGAATACTAAAGCCGGTATTAC
TTATGCAAGTTCATTTAAAGCCATACTTCGGTGCGATCCAGATGTTATTTTGATTGGAGAAATCAGAGACGCTGAAATAG
CAAAATATGTGTTTCAAGCAAGCTTGAGTGGCCATTTAGTATTAAGTACATTACATGCTAATGATTGCAAAGGGGCATTG
TTAAGATTATTAGAGATGGGTATTACGATTCAAGAACTATCACAAGCTATCAATTTAATATCTAACCAACGTTTAATAAC
CACTTCAAGCCAACGACGCCAATTAGTTTGTGAACTTATGTTCAAAAATCAAATCAATTACTTTTTTGAACATAATCAAA
CAATGCCTAGATCTTTTAAGCGACTATCTTCAAAACTAGATGATATGACTAAAGAGGGAATTATATGTGAAACAATTGCT
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
74.383 |
100 |
0.744 |
| comGA | Staphylococcus aureus N315 |
74.383 |
100 |
0.744 |