Detailed information NTG0321333

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEL02_RS21100
• Genome accession: NZ_CP040313
• Coordinates: 4266129..4267121 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain M7638
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4261129..4272121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEL02_RS21075 (FEL02_21685)	pphB	4262491..4263147 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
FEL02_RS21080 (FEL02_21690)	-	4263188..4263424 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FEL02_RS21085 (FEL02_21695)	-	4263435..4264862 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FEL02_RS21090 (FEL02_21700)	-	4264862..4265455 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FEL02_RS21095 (FEL02_21705)	-	4265602..4266009 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
FEL02_RS21100 (FEL02_21710)	rpoS	4266129..4267121 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEL02_RS21105 (FEL02_21715)	nlpD	4267184..4268278 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
FEL02_RS21110 (FEL02_21720)	pcm	4268463..4269089 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEL02_RS21115 (FEL02_21725)	surE	4269083..4269844 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FEL02_RS21120 (FEL02_21730)	truD	4269825..4270874 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
FEL02_RS21125 (FEL02_21735)	ispF	4270871..4271350 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEL02_RS21130 (FEL02_21740)	ispD	4271350..4272060 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321333 FEL02_RS21100 WP_000081550.1 4266129..4267121(-) (rpoS) [Escherichia coli strain M7638]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321333 FEL02_RS21100 WP_000081550.1 4266129..4267121(-) (rpoS) [Escherichia coli strain M7638]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715