Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   EAH52_RS08910 Genome accession   NZ_CP033098
Coordinates   1824780..1825349 (-) Length   189 a.a.
NCBI ID   WP_122135100.1    Uniprot ID   -
Organism   Staphylococcus warneri strain SWO     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819780..1830349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAH52_RS08880 - 1820776..1821714 (+) 939 WP_002465619.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EAH52_RS08885 - 1821769..1822323 (-) 555 WP_015365209.1 GNAT family N-acetyltransferase -
  EAH52_RS08890 - 1822527..1822739 (+) 213 WP_002465642.1 TM2 domain-containing protein -
  EAH52_RS13020 - 1822840..1822941 (+) 102 WP_019235857.1 SAR1012 family small protein -
  EAH52_RS08895 - 1823165..1823521 (+) 357 WP_002465605.1 DoxX family protein -
  EAH52_RS08910 comK/comK1 1824780..1825349 (-) 570 WP_122135100.1 competence protein ComK Regulator
  EAH52_RS08915 - 1825568..1825786 (+) 219 WP_002465640.1 IDEAL domain-containing protein -
  EAH52_RS08920 - 1825866..1826852 (-) 987 WP_002465637.1 lipoate--protein ligase -
  EAH52_RS08925 - 1827057..1827242 (+) 186 WP_002450747.1 DUF2187 family protein -
  EAH52_RS08930 - 1827248..1827850 (+) 603 WP_002465620.1 CPBP family glutamic-type intramembrane protease -
  EAH52_RS08935 - 1828006..1829514 (-) 1509 WP_002465613.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22480.72 Da        Isoelectric Point: 9.6328

>NTDB_id=321340 EAH52_RS08910 WP_122135100.1 1824780..1825349(-) (comK/comK1) [Staphylococcus warneri strain SWO]
MTTQNIYVIRKGDMVIRPNYDNQNQPNGSEIIRFDKTVIQSPFKVQKIIERSCKFYGNNYLSKKSETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQEENLWINMHYVESIKELKHRKCKIIFANNETITLNVSFHSLWYQYTNAIFFYYMVDKQSRMKS
NDPDKPIDYEKSSLNIFEALSRYSLFVDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=321340 EAH52_RS08910 WP_122135100.1 1824780..1825349(-) (comK/comK1) [Staphylococcus warneri strain SWO]
ATGACAACTCAGAATATTTACGTAATTAGAAAGGGAGACATGGTGATTAGGCCTAATTATGATAATCAAAATCAACCAAA
TGGTTCAGAAATTATTCGGTTTGATAAGACAGTCATACAAAGCCCATTTAAAGTTCAAAAGATTATAGAGAGATCATGCA
AATTTTATGGTAACAATTATTTAAGTAAAAAATCTGAAACCAATCGAATCACAGGTATCTCAAGTAAACCTCCAATTTTA
TTAACTCCTTTATTTCCAACTTACTTTTTTCCTACTCATTCAGATCGACAAGAAGAAAATTTATGGATTAATATGCATTA
TGTTGAATCTATTAAAGAATTAAAACATCGTAAATGTAAAATCATATTTGCAAACAATGAAACCATTACCCTTAATGTAT
CATTCCACAGTTTATGGTATCAGTATACCAACGCAATCTTCTTTTATTATATGGTAGATAAACAATCCCGCATGAAATCT
AATGACCCCGATAAACCCATCGATTATGAAAAATCCTCATTAAACATTTTTGAAGCATTATCACGTTATTCGCTATTTGT
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

79.365

100

0.794
  comK/comK1 Staphylococcus aureus N315

79.365

100

0.794

Multiple sequence alignment