Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EAH52_RS07690 Genome accession   NZ_CP033098
Coordinates   1589128..1589997 (-) Length   289 a.a.
NCBI ID   WP_031463954.1    Uniprot ID   A0A8B2ZHG9
Organism   Staphylococcus warneri strain SWO     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1584128..1594997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAH52_RS07675 xerC 1584393..1585286 (-) 894 WP_117725866.1 tyrosine recombinase XerC -
  EAH52_RS07680 trmFO 1585451..1586758 (-) 1308 WP_002466058.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EAH52_RS07685 topA 1586875..1588950 (-) 2076 WP_174221802.1 type I DNA topoisomerase -
  EAH52_RS07690 dprA 1589128..1589997 (-) 870 WP_031463954.1 DNA-processing protein DprA Machinery gene
  EAH52_RS07695 sucD 1590238..1591143 (-) 906 WP_002466045.1 succinate--CoA ligase subunit alpha -
  EAH52_RS07700 sucC 1591165..1592331 (-) 1167 WP_002466034.1 ADP-forming succinate--CoA ligase subunit beta -
  EAH52_RS07705 - 1592439..1593209 (-) 771 WP_002466053.1 ribonuclease HII -
  EAH52_RS07710 ylqF 1593202..1594077 (-) 876 WP_002466050.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 33695.74 Da        Isoelectric Point: 8.6890

>NTDB_id=321339 EAH52_RS07690 WP_031463954.1 1589128..1589997(-) (dprA) [Staphylococcus warneri strain SWO]
MNENFLPKLYWSHFTTSQIHQFYRYNPHIFQMTSNEQEISLLYWITQHHPTLLSKFHKYKQINIVEIMKILRQLHVKYIT
FFDEDYPYLLKEIYDYPFVLFYKGDKKLFLSNQTLAIVGARKCSNYTQEALQYLFPSFKEKNITIISGLAEGADSEAHIQ
ALKIDLSTIAVLGFGHHYYYPRNLVSLRKNIEEKGLVISEYPPFSPIAKYKFPERNRIISGLSKGVLLTESNERSGSRIT
VDCALEQNRNVYVLPGKLFDSKTKGNLLLHQEGASMVVSAEDILQDYLN

Nucleotide


Download         Length: 870 bp        

>NTDB_id=321339 EAH52_RS07690 WP_031463954.1 1589128..1589997(-) (dprA) [Staphylococcus warneri strain SWO]
TTGAACGAAAACTTTTTACCTAAATTATACTGGTCACATTTTACAACCTCACAAATCCATCAATTTTATCGGTACAACCC
TCATATTTTCCAAATGACTTCTAATGAACAAGAAATTTCATTATTATATTGGATTACTCAACATCATCCTACGCTTTTAT
CAAAATTTCATAAATATAAACAAATAAATATAGTAGAAATTATGAAAATTCTTCGACAATTACATGTAAAATATATCACT
TTTTTCGACGAAGATTATCCTTATTTATTAAAAGAAATCTATGATTATCCATTTGTTCTATTTTATAAGGGAGATAAGAA
ATTATTTTTAAGTAATCAAACTTTGGCAATTGTTGGTGCTAGGAAATGTTCAAATTATACGCAAGAAGCACTACAATATC
TTTTTCCTTCATTTAAAGAAAAAAATATTACGATTATTTCTGGGTTAGCAGAAGGTGCCGATAGTGAAGCACACATACAA
GCCTTGAAAATCGATTTATCAACCATTGCAGTATTAGGGTTTGGTCACCATTATTATTATCCTAGAAACTTAGTTTCATT
AAGAAAAAATATTGAAGAAAAGGGGTTAGTTATTTCGGAGTACCCACCATTTTCGCCAATTGCTAAGTATAAGTTTCCAG
AAAGAAATAGGATTATTAGTGGATTATCAAAAGGTGTATTATTAACTGAATCAAATGAAAGAAGTGGTAGCAGAATCACA
GTTGATTGTGCATTAGAACAAAATAGAAATGTGTATGTTTTACCGGGTAAATTATTTGATTCAAAAACAAAAGGAAATCT
ATTATTGCATCAAGAAGGAGCTTCTATGGTCGTTAGTGCTGAAGACATTTTACAAGACTATTTAAATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B2ZHG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus N315

55.634

98.27

0.547
  dprA Staphylococcus aureus MW2

55.634

98.27

0.547

Multiple sequence alignment