Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   EAE30_RS17430 Genome accession   NZ_CP033078
Coordinates   2640955..2642001 (-) Length   348 a.a.
NCBI ID   WP_261809166.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2610121..2644990 2640955..2642001 within 0


Gene organization within MGE regions


Location: 2610121..2644990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS17275 secB 2610121..2610579 (-) 459 WP_123017032.1 protein-export chaperone SecB -
  EAE30_RS17280 - 2610747..2611181 (-) 435 WP_123017033.1 rhodanese-like domain-containing protein -
  EAE30_RS17285 epmA 2611311..2612294 (-) 984 WP_123017034.1 elongation factor P--(R)-beta-lysine ligase -
  EAE30_RS17290 frdA 2612614..2614407 (+) 1794 WP_123017035.1 fumarate reductase (quinol) flavoprotein subunit -
  EAE30_RS17295 - 2614409..2615143 (+) 735 WP_123017036.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  EAE30_RS17300 frdC 2615147..2615530 (+) 384 WP_123017408.1 fumarate reductase subunit FrdC -
  EAE30_RS17305 frdD 2615541..2615906 (+) 366 WP_123017037.1 fumarate reductase subunit FrdD -
  EAE30_RS17310 - 2616053..2617501 (+) 1449 WP_123017038.1 DASS family sodium-coupled anion symporter -
  EAE30_RS17315 efp 2617573..2618139 (-) 567 WP_123017039.1 elongation factor P -
  EAE30_RS17320 epmB 2618172..2619194 (+) 1023 WP_123017040.1 EF-P beta-lysylation protein EpmB -
  EAE30_RS17325 - 2619299..2619787 (+) 489 WP_123017041.1 MgtC/SapB family protein -
  EAE30_RS17330 - 2619806..2621254 (-) 1449 WP_123017042.1 ATP-binding cassette domain-containing protein -
  EAE30_RS17335 - 2621570..2622517 (-) 948 WP_123014135.1 IS30 family transposase -
  EAE30_RS17340 - 2622914..2623234 (+) 321 WP_123017043.1 hypothetical protein -
  EAE30_RS17345 - 2623224..2623661 (+) 438 WP_123017044.1 hypothetical protein -
  EAE30_RS17350 - 2623936..2624883 (+) 948 WP_123014135.1 IS30 family transposase -
  EAE30_RS17360 ppsA 2626451..2628832 (-) 2382 WP_241967692.1 phosphoenolpyruvate synthase -
  EAE30_RS17365 - 2629004..2629837 (+) 834 WP_123017045.1 pyruvate, water dikinase regulatory protein -
  EAE30_RS17370 groL 2630192..2631838 (-) 1647 WP_123017046.1 chaperonin GroEL -
  EAE30_RS17375 - 2631890..2632180 (-) 291 WP_123017047.1 co-chaperone GroES -
  EAE30_RS17380 - 2632481..2633101 (+) 621 WP_123017048.1 metalloregulator ArsR/SmtB family transcription factor -
  EAE30_RS17385 - 2633191..2633658 (-) 468 WP_123017049.1 DUF805 domain-containing protein -
  EAE30_RS17390 - 2633668..2634021 (-) 354 WP_123017050.1 5-carboxymethyl-2-hydroxymuconate Delta-isomerase -
  EAE30_RS17395 tpiA 2634239..2635012 (+) 774 WP_123017051.1 triose-phosphate isomerase -
  EAE30_RS17400 - 2635158..2636513 (+) 1356 WP_123017052.1 MATE family efflux transporter -
  EAE30_RS17405 rraA 2636585..2637124 (-) 540 WP_123017053.1 ribonuclease E activity regulator RraA -
  EAE30_RS17410 - 2637198..2638115 (-) 918 WP_123017054.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  EAE30_RS17415 hslU 2638220..2639554 (-) 1335 WP_123017055.1 HslU--HslV peptidase ATPase subunit -
  EAE30_RS17420 hslV 2639600..2640163 (-) 564 WP_123017056.1 ATP-dependent protease subunit HslV -
  EAE30_RS17425 - 2640283..2640837 (-) 555 WP_123017057.1 SPOR domain-containing protein -
  EAE30_RS17430 cytR 2640955..2642001 (-) 1047 WP_261809166.1 DNA-binding transcriptional regulator CytR Regulator
  EAE30_RS17435 priA 2642264..2644468 (-) 2205 WP_123017059.1 primosomal protein N' -
  EAE30_RS17440 rpmE 2644775..2644990 (+) 216 WP_123017060.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38445.27 Da        Isoelectric Point: 6.7553

>NTDB_id=321227 EAE30_RS17430 WP_261809166.1 2640955..2642001(-) (cytR) [Vibrio zhugei strain HBUAS61001]
MNYPDFNKRVFCMATMKNVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPD
ICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKREHSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFA
PELELPTVHIDNLTSAFEAVNYLTQMGHKRIAEIAGPKSAALCSFRHQGYQQALRRAGLTMNDDYCMHGDFSFDAGAHIV
TQLLALPQAPTAIFCHNDMMAIGAIQKAKRLGLRVPQDLSVVGFDDIQFAQFCDPPLTTISQPRYEIGRQAMLMMLDVLR
GHDVQAGSRLLDTALVVRESTAPPRSVQ

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=321227 EAE30_RS17430 WP_261809166.1 2640955..2642001(-) (cytR) [Vibrio zhugei strain HBUAS61001]
ATTAACTATCCAGATTTTAATAAGAGGGTTTTTTGTATGGCGACAATGAAGAACGTTGCCCAGCTTGCCGGTGTATCAAC
TGCCACGGTCTCTCGTGCATTGATGAACCCGGAAAAAGTCTCTTCTTCGACACGCAAACGTGTGGAAGAAGCGGTTTTAG
AAGCGGGTTACTCTCCAAATTCTTTAGCGAGAAACTTACGCCGAAATGAATCGAAGACGATCGTCGCGATCGTGCCTGAT
ATCTGTGATCCTTATTTCTCTGAAATCATTCGTGGCATCGAAGATGCAGCGATGGAGCACGGGTATTTAGTTTTACTTGG
TGATAGTGGACAACAAAAGAAGCGGGAACATTCATTCGTCAACCTTGTGTTTACGAAACAAGCCGATGGTATGTTATTGC
TCGGTACGGATCTGCCGTTTGATGTTAGCAAACCTGAGCAGAAAAATTTGCCGCCGATGGTGATGGCGTGCGAGTTTGCT
CCTGAGCTGGAATTACCCACCGTTCATATTGATAACTTAACGTCGGCCTTTGAAGCGGTGAACTATTTAACGCAAATGGG
TCACAAGCGTATTGCTGAAATCGCGGGACCTAAGAGTGCGGCCTTGTGTTCTTTTCGCCACCAAGGTTATCAGCAAGCTT
TGCGCCGAGCGGGTCTTACCATGAATGATGATTACTGTATGCACGGTGATTTTTCGTTTGATGCAGGCGCGCACATCGTG
ACGCAGTTGCTCGCGTTGCCTCAAGCGCCCACCGCCATTTTTTGTCACAATGACATGATGGCGATTGGTGCTATCCAAAA
AGCCAAACGTCTTGGTTTGCGTGTGCCGCAGGATTTATCCGTGGTTGGATTTGATGACATCCAATTTGCTCAATTTTGCG
ATCCACCATTGACGACGATTTCGCAACCTCGTTATGAAATTGGCCGTCAGGCGATGCTTATGATGTTAGATGTCTTGCGT
GGGCATGATGTTCAAGCCGGATCAAGACTGCTTGATACCGCTTTGGTAGTCAGAGAAAGTACCGCGCCGCCGCGCTCTGT
GCAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(180-341)

Bacterial regulatory proteins, lacI family (LacI)

(15-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

90.964

95.402

0.868
  cytR Vibrio parahaemolyticus RIMD 2210633

85.207

97.126

0.828

Multiple sequence alignment