Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   EAE30_RS16160 Genome accession   NZ_CP033078
Coordinates   2379527..2380144 (+) Length   205 a.a.
NCBI ID   WP_123016836.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2374527..2385144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS16135 panC 2375087..2375974 (+) 888 WP_123016831.1 pantoate--beta-alanine ligase -
  EAE30_RS16140 - 2376040..2376810 (-) 771 WP_123016832.1 ABC transporter permease -
  EAE30_RS16145 - 2376819..2377733 (-) 915 WP_123016833.1 ABC transporter ATP-binding protein -
  EAE30_RS16150 can 2377961..2378629 (+) 669 WP_123016834.1 carbonate dehydratase -
  EAE30_RS16155 hpt 2378673..2379203 (-) 531 WP_123016835.1 hypoxanthine phosphoribosyltransferase -
  EAE30_RS16160 hapR 2379527..2380144 (+) 618 WP_123016836.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  EAE30_RS16165 lpdA 2380249..2381673 (-) 1425 WP_123016837.1 dihydrolipoyl dehydrogenase -
  EAE30_RS16170 aceF 2381913..2383790 (-) 1878 WP_123016838.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23690.81 Da        Isoelectric Point: 5.8745

>NTDB_id=321223 EAE30_RS16160 WP_123016836.1 2379527..2380144(+) (hapR) [Vibrio zhugei strain HBUAS61001]
MDASIERRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTFVVRQYSNFL
TDNIDLDLHARQNLRNIANGIVDLANDDCHWLKVWFEWSASTREEVWPLFVSSNHTNQLLLKNMFTKGIERGELDNRYDA
EDMATLFHGLCYSLFVQTNRVPNENSVHQLVDNYLDMLCIYAKAS

Nucleotide


Download         Length: 618 bp        

>NTDB_id=321223 EAE30_RS16160 WP_123016836.1 2379527..2380144(+) (hapR) [Vibrio zhugei strain HBUAS61001]
ATGGATGCTTCTATTGAAAGGCGGCCGCGTACCCGTTTATCTCCACAAAAGCGCAAACATCAATTAATGGAAATTGCGCT
CGAAGTTTTTGCAAAACGAGGAATTGGACGTGGTGGTCATGCGGATATCGCCGAAATTGCCCAAGTGTCAGTGGCGACCG
TTTTTAACTACTTTCCAACCCGAGAAGACTTAGTCGACGACGTACTCACCTTCGTTGTTCGTCAATACTCGAACTTCTTA
ACCGACAACATCGATCTAGATCTCCATGCTCGCCAAAACCTTAGAAACATTGCCAATGGCATTGTTGACTTGGCTAATGA
CGACTGCCACTGGCTGAAAGTCTGGTTTGAATGGAGCGCATCAACGCGTGAAGAAGTATGGCCACTGTTTGTTTCATCAA
ACCACACCAATCAACTTCTGCTGAAAAACATGTTCACCAAAGGCATTGAACGCGGTGAGTTAGATAACCGCTACGATGCT
GAAGACATGGCGACACTGTTCCATGGACTTTGTTACTCACTGTTTGTACAGACCAACCGAGTTCCAAATGAAAATAGCGT
GCATCAATTAGTTGATAACTATCTCGATATGCTATGCATCTACGCTAAAGCAAGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

75.124

98.049

0.737
  hapR Vibrio cholerae strain A1552

75.124

98.049

0.737
  opaR Vibrio parahaemolyticus RIMD 2210633

74

97.561

0.722

Multiple sequence alignment