Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   EAE30_RS13755 Genome accession   NZ_CP033078
Coordinates   1833164..1834534 (-) Length   456 a.a.
NCBI ID   WP_123017383.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1828164..1839534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS13720 moaE 1828790..1829248 (-) 459 WP_123016435.1 molybdopterin synthase catalytic subunit MoaE -
  EAE30_RS13725 moaD 1829250..1829495 (-) 246 WP_123016436.1 molybdopterin synthase sulfur carrier subunit -
  EAE30_RS13730 moaC 1829492..1829971 (-) 480 WP_123016437.1 cyclic pyranopterin monophosphate synthase MoaC -
  EAE30_RS13735 moaB 1829984..1830490 (-) 507 WP_123016438.1 molybdenum cofactor biosynthesis protein B -
  EAE30_RS13740 moaA 1830599..1831588 (-) 990 WP_123016439.1 GTP 3',8-cyclase MoaA -
  EAE30_RS13745 yvcK 1831886..1832776 (+) 891 WP_123016440.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  EAE30_RS13750 luxU 1832811..1833158 (-) 348 WP_123016441.1 quorum-sensing phosphorelay protein LuxU -
  EAE30_RS13755 luxO 1833164..1834534 (-) 1371 WP_123017383.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  EAE30_RS13760 uvrB 1834845..1836875 (-) 2031 WP_123016442.1 excinuclease ABC subunit UvrB -
  EAE30_RS13770 - 1837729..1838958 (+) 1230 WP_123016443.1 integrase domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50797.08 Da        Isoelectric Point: 5.5362

>NTDB_id=321221 EAE30_RS13755 WP_123017383.1 1833164..1834534(-) (luxO) [Vibrio zhugei strain HBUAS61001]
MVEDTASVAALYRSYLTPLNIDITLVGTGQDAIRSIAEREPDLILLDLRLPDMTGMDVLYAVKREHPHVPIVFMTAHGSI
DTAVDAMRHGAQDFLLKPCEADRLRVTVNNAMRKASKLKDDALDPDNQNYQGFIGSSHTMQAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRVDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVIEIAYSLLG
FMSKEEGKGFVRMSADVVERFKHYEWPGNVRQLQNVLRNVVVLNEGREILLTMLPPPLNQPVEKAITDARPEASESSLSV
RDIRPLWLTEKLAIEQAIEACDGNIPRAAGYLDVSPSTLYRKLQTWNSQKIKEKES

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=321221 EAE30_RS13755 WP_123017383.1 1833164..1834534(-) (luxO) [Vibrio zhugei strain HBUAS61001]
ATGGTGGAAGATACGGCATCAGTGGCAGCACTGTACCGATCGTATCTGACGCCATTAAATATTGATATTACGCTTGTCGG
TACGGGTCAGGATGCGATTCGGTCGATCGCTGAGCGCGAACCTGACTTAATTTTACTCGATTTGCGCCTGCCCGATATGA
CGGGTATGGATGTGTTATACGCGGTCAAACGTGAGCATCCACATGTTCCGATTGTCTTTATGACGGCCCATGGTTCCATT
GACACCGCGGTTGACGCAATGCGCCATGGTGCACAAGACTTTTTGCTCAAACCTTGTGAAGCGGATCGCTTACGTGTCAC
GGTCAATAATGCTATGCGTAAGGCGAGTAAATTAAAAGATGATGCACTCGACCCGGATAATCAGAACTATCAGGGGTTCA
TTGGCAGTAGCCATACAATGCAAGCGGTGTATCGTACCATTGACTCTGCCGCCAGCAGTAAAGCCAGTATTTTTATTACT
GGTGAAAGTGGTACAGGCAAAGAAGTGTGTGCCGAAGCGATTCATGCAGCCAGTAAACGAGTGGATAAGCCATTTATTGC
CATTAACTGTGCGGCCATTCCGAAAGATCTCATCGAGAGTGAATTGTTCGGTCATGTCAAAGGCGCGTTTACTGGCGCTG
CCACTGATCGCCAAGGGGCCGCTGAACTTGCCGATGGTGGTACTTTGTTTTTGGATGAACTGTGCGAAATGGATTTGGAT
CTGCAAACCAAACTGTTACGTTTTATTCAGACAGGGACATTCCAGAAAGTGGGGTCTTCGAAGATGAAAAGCGTCGATGT
ACGCTTTGTCTGCGCGACCAACCGGGATCCGTGGAAAGAAGTGCAAGAAGGACGCTTTCGTGAAGACTTGTACTATCGTT
TGTACGTGATTCCACTGCATTTACCACCGTTGCGAGAGCGCGGGGAAGACGTGATTGAAATTGCCTATTCCTTATTAGGG
TTTATGTCGAAAGAGGAAGGCAAGGGCTTTGTGAGAATGTCGGCTGATGTGGTGGAGCGGTTTAAGCATTATGAATGGCC
AGGTAATGTGCGCCAGTTGCAGAACGTATTGCGTAATGTGGTGGTGTTGAATGAAGGCCGTGAAATTTTGCTGACCATGT
TGCCACCGCCACTGAATCAGCCAGTGGAGAAGGCCATTACCGATGCGCGACCAGAAGCGTCGGAATCGTCATTGTCTGTG
AGAGACATTCGTCCATTGTGGTTAACTGAGAAGCTTGCCATCGAACAAGCAATCGAGGCGTGTGATGGAAATATTCCACG
AGCGGCGGGCTATCTCGATGTGAGTCCGTCAACCTTGTATCGTAAATTACAAACGTGGAACAGTCAGAAAATCAAAGAAA
AGGAAAGTTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)

Bacterial regulatory protein, Fis family (HTH_8)

(406-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.367

98.026

0.866
  pilR Pseudomonas aeruginosa PAK

39.421

98.465

0.388

Multiple sequence alignment