Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EAE30_RS12540 Genome accession   NZ_CP033078
Coordinates   1579946..1581370 (+) Length   474 a.a.
NCBI ID   WP_123016223.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1574946..1586370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS12515 - 1575405..1575836 (+) 432 WP_123016218.1 hypothetical protein -
  EAE30_RS12520 yegD 1576105..1577484 (-) 1380 WP_123016219.1 molecular chaperone -
  EAE30_RS12525 - 1577715..1578524 (+) 810 WP_123016220.1 DUF2076 domain-containing protein -
  EAE30_RS12530 - 1578600..1579076 (-) 477 WP_123016221.1 NYN domain-containing protein -
  EAE30_RS12535 - 1579339..1579674 (-) 336 WP_123016222.1 hypothetical protein -
  EAE30_RS12540 sbcB 1579946..1581370 (+) 1425 WP_123016223.1 exodeoxyribonuclease I Machinery gene
  EAE30_RS12545 - 1581394..1581783 (+) 390 WP_123016224.1 CidA/LrgA family protein -
  EAE30_RS12550 - 1581783..1582469 (+) 687 WP_123016225.1 LrgB family protein -
  EAE30_RS12555 cdd 1582673..1583569 (+) 897 WP_123016226.1 cytidine deaminase -
  EAE30_RS12560 - 1583673..1584068 (-) 396 WP_123016227.1 DUF393 domain-containing protein -
  EAE30_RS12565 - 1584133..1584825 (-) 693 WP_123016228.1 2'-5' RNA ligase family protein -
  EAE30_RS12570 purT 1585133..1586308 (+) 1176 WP_123016229.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54743.10 Da        Isoelectric Point: 5.7692

>NTDB_id=321215 EAE30_RS12540 WP_123016223.1 1579946..1581370(+) (sbcB) [Vibrio zhugei strain HBUAS61001]
MQQDHQPTFFFFDYETWGTSPAKDRPSQFAGIRTDKDFNIIGEPVVLYCQLPADYLPNPEAALITGIKPQVAMQKGVPEP
EFIQRIYQELATPNTTNLGYNNIRFDDEVTRYTAYRNFLDPYEWSYKNGNSRWDLLDVLRACHALRPEGIEWPQNEDGYT
SFKLEHLSKANGIEHENAHDALADVIATIEMAKKVKLAQPKLFDYFFSMRNKRPLNDLIDIVNMTPLMHVSGMLGRDCHY
TSWVVPVAWHPTNKNAVIMVDLAKDPQVLLDLTADELTERLYTKKEALGPDEDPVPVKLVHINKCPILAPAKTLTADNAA
QIGIDRQQCLAHLAILRENTQIREKLVTLFSHEREYPASTDVDTQLYDGFFSPTDKAAMAIIRDSHPENLGALDIQFHDP
RIKPLLFRYRARHFPWTLSESEQHRWKDHCREYFESHIESYMLNLENLMHEHESDSKKMALLKAVYQYVEHIAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=321215 EAE30_RS12540 WP_123016223.1 1579946..1581370(+) (sbcB) [Vibrio zhugei strain HBUAS61001]
ATGCAACAGGACCACCAACCAACTTTCTTTTTCTTTGACTATGAAACGTGGGGGACCAGCCCAGCAAAAGATCGGCCAAG
CCAATTTGCTGGAATTCGTACAGATAAAGATTTTAATATCATTGGTGAACCGGTCGTCCTCTATTGTCAATTACCTGCAG
ATTACCTGCCCAATCCTGAAGCTGCGTTAATTACCGGTATCAAACCTCAAGTCGCGATGCAAAAAGGCGTGCCTGAGCCT
GAATTCATTCAGCGCATTTATCAAGAGCTTGCTACCCCCAATACGACCAACCTCGGCTACAACAATATTCGTTTTGATGA
TGAAGTCACTCGCTATACCGCCTATCGTAACTTTCTTGATCCCTATGAGTGGAGTTATAAAAATGGCAACTCTCGCTGGG
ACCTCCTTGATGTACTGCGTGCTTGTCATGCCTTACGTCCTGAGGGCATCGAATGGCCTCAAAACGAGGACGGCTACACC
AGCTTTAAACTGGAACACTTGTCGAAAGCCAATGGTATAGAACACGAAAATGCGCATGATGCATTAGCCGATGTCATCGC
AACCATTGAAATGGCAAAGAAAGTAAAATTGGCTCAGCCTAAACTGTTTGACTATTTCTTTAGTATGCGCAATAAGCGTC
CACTCAACGATTTGATCGATATTGTCAATATGACGCCACTGATGCATGTCTCTGGCATGCTGGGCCGCGACTGTCACTAC
ACCAGTTGGGTCGTTCCGGTTGCGTGGCATCCCACCAATAAGAATGCGGTGATCATGGTCGATCTGGCTAAAGACCCGCA
AGTCCTCCTGGATTTAACCGCCGACGAATTGACAGAGCGACTGTACACTAAGAAAGAAGCATTAGGGCCCGACGAAGATC
CGGTACCAGTAAAACTCGTCCACATTAATAAGTGCCCAATACTGGCACCAGCGAAAACCCTAACCGCTGACAATGCGGCG
CAAATCGGCATCGATCGTCAACAGTGTTTAGCGCATCTTGCAATCCTGCGTGAGAATACACAAATTCGGGAAAAACTCGT
CACTTTGTTCTCTCATGAACGAGAATATCCGGCCAGTACCGATGTTGATACCCAACTCTATGACGGGTTCTTCTCTCCCA
CAGATAAAGCCGCTATGGCCATCATTCGCGACAGCCACCCAGAGAATCTTGGTGCATTAGACATTCAATTTCATGATCCG
CGCATCAAGCCTTTGCTGTTTCGCTATCGTGCCCGTCACTTCCCTTGGACGCTCAGCGAAAGTGAACAACATCGTTGGAA
AGATCATTGCCGAGAGTATTTCGAAAGTCATATCGAATCATACATGTTGAATTTGGAGAACTTAATGCATGAGCATGAAA
GCGACTCCAAGAAAATGGCTCTGCTGAAAGCAGTTTATCAGTACGTCGAACACATCGCGTCTTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.264

99.789

0.751

Multiple sequence alignment