Detailed information NTG0321209

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EAE30_RS07595
• Genome accession: NZ_CP033078
• Coordinates: 524582..525556 (+)
• Length: 324 a.a.
• NCBI ID: WP_123015387.1
• Uniprot ID: -
• Organism: Vibrio zhugei strain HBUAS61001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 519582..530556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAE30_RS07560	ftsB	519679..519972 (+)	294	WP_123015381.1	cell division protein FtsB	-
EAE30_RS07565	ispD	519972..520670 (+)	699	WP_123017293.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EAE30_RS07570	ispF	520667..521143 (+)	477	WP_123015382.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EAE30_RS07575	truD	521165..522211 (+)	1047	WP_123015383.1	tRNA pseudouridine(13) synthase TruD	-
EAE30_RS07580	surE	522204..522959 (+)	756	WP_123015384.1	5'/3'-nucleotidase SurE	-
EAE30_RS07585	-	522965..523591 (+)	627	WP_123015385.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EAE30_RS07590	-	523591..524508 (+)	918	WP_123015386.1	peptidoglycan DD-metalloendopeptidase family protein	-
EAE30_RS07595	rpoS	524582..525556 (+)	975	WP_123015387.1	RNA polymerase sigma factor RpoS	Regulator
EAE30_RS07600	mutS	525633..528194 (-)	2562	WP_123015388.1	DNA mismatch repair protein MutS	-
EAE30_RS07605	pncC	528279..528773 (+)	495	WP_123017294.1	nicotinamide-nucleotide amidase	-
EAE30_RS07610	recA	528923..529966 (+)	1044	WP_123017295.1	recombinase RecA	Machinery gene
EAE30_RS07615	recX	530038..530499 (+)	462	WP_123015389.1	recombination regulator RecX	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37027.92 Da
• Isoelectric Point: 4.8747

>NTDB_id=321209 EAE30_RS07595 WP_123015387.1 524582..525556(+) (rpoS) [Vibrio zhugei strain HBUAS61001]
MSISNTATKVEEFEFDATQYDVTDSSSTKKTANAQDDFEVSSKSLDATQMYLSEIGFSPLLTAEEEVLYARRALRGCDTA
RKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPIH
VVKELNIYLRTARELSQRLDHEPTAEEIAQELDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDGHHSDPEVST
QDNDIKASLVNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILVKQGLSMEALFNV
EAEF

Nucleotide

• Length: 975 bp

>NTDB_id=321209 EAE30_RS07595 WP_123015387.1 524582..525556(+) (rpoS) [Vibrio zhugei strain HBUAS61001]
ATGAGTATTAGTAACACTGCTACAAAAGTAGAAGAATTTGAATTCGACGCAACGCAATACGATGTGACAGATTCAAGTTC
AACCAAAAAAACGGCCAATGCTCAAGATGACTTTGAAGTCTCATCAAAAAGTTTAGATGCGACTCAAATGTACTTAAGCG
AAATTGGTTTCTCACCACTATTAACAGCAGAAGAAGAAGTGTTATATGCTCGACGTGCGTTACGTGGTTGCGATACTGCG
CGCAAACGTATGATCGAAAGTAATTTACGCTTAGTTGTTAAAATCTCTCGTCGTTATGGCAACCGCGGTTTGGCGCTTCT
TGATTTAATTGAAGAAGGCAACCTTGGTTTGATTCGTGCGGTCGAGAAATTCGACCCAGAACGTGGATTCCGTTTTTCCA
CCTACGCGACGTGGTGGATTCGCCAAACGATTGAGCGTGCGCTAATGAACCAAACACGAACCATTCGTTTACCGATTCAT
GTTGTTAAAGAATTGAATATTTATTTACGGACTGCACGTGAACTTTCACAACGTTTAGACCATGAACCTACCGCTGAAGA
AATCGCTCAAGAGCTGGATAAGCCTGTTGAAGATGTCAGTAAAATGCTCCGTCTGAATGAGCGTATCAGTTCTGTGGATA
CACCGATTGGCGGTGATGGTGATAAAGCGTTGTTGGATATCATTCCTGATGGTCATCATTCTGATCCCGAAGTTTCGACC
CAAGATAATGATATTAAAGCATCATTAGTCAACTGGTTAGATGAACTGAATCCAAAACAAAAAGAAGTGCTTGCTCGTCG
TTTTGGATTGTTGGGTTACGAACCGTCAACGTTGGAAGAAGTTGGACGTGAAATCAGCCTGACTCGTGAACGTGTTCGTC
AGATTCAAGTGGAAGGGCTACGGCGTCTGCGCGAAATCTTGGTCAAACAAGGGTTGAGCATGGAAGCACTCTTTAACGTT
GAAGCTGAATTCTAG

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (164-237)

• Sigma-70 region 2 (Sigma70_r2) (84-153)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (46-76)

• Sigma-70, region 4 (Sigma70_r4) (252-305)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.434	100	0.855