Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D9C22_RS19030 Genome accession   NZ_CP033064
Coordinates   3619947..3620636 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. WR11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3614947..3625636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C22_RS18995 (D9C22_19000) flgN 3615127..3615609 (-) 483 WP_014481048.1 flagellar protein FlgN -
  D9C22_RS19000 (D9C22_19005) flgM 3615625..3615891 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9C22_RS19005 (D9C22_19010) - 3615972..3616391 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  D9C22_RS19010 (D9C22_19015) comFC 3616465..3617187 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  D9C22_RS19015 (D9C22_19020) comFB 3617151..3617447 (-) 297 WP_003227989.1 late competence protein ComFB -
  D9C22_RS19020 (D9C22_19025) comFA 3617507..3618898 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  D9C22_RS19025 (D9C22_19030) - 3619004..3619849 (-) 846 WP_003227986.1 DegV family protein -
  D9C22_RS19030 (D9C22_19035) degU 3619947..3620636 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9C22_RS19035 (D9C22_19040) degS 3620719..3621876 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  D9C22_RS19040 (D9C22_19045) - 3622093..3622746 (+) 654 WP_003227979.1 YigZ family protein -
  D9C22_RS19045 (D9C22_19050) tagV 3622746..3623930 (+) 1185 WP_041850474.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  D9C22_RS19050 (D9C22_19055) - 3624003..3625079 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=321099 D9C22_RS19030 WP_003219701.1 3619947..3620636(-) (degU) [Bacillus sp. WR11]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=321099 D9C22_RS19030 WP_003219701.1 3619947..3620636(-) (degU) [Bacillus sp. WR11]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment