Detailed information NTG0321097

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEL01_RS21715
• Genome accession: NZ_CP040307
• Coordinates: 4364167..4365159 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain F1 E4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4359167..4370159

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEL01_RS21690 (FEL01_22325)	pphB	4360529..4361185 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
FEL01_RS21695 (FEL01_22330)	-	4361226..4361462 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FEL01_RS21700 (FEL01_22335)	-	4361473..4362900 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FEL01_RS21705 (FEL01_22340)	-	4362900..4363493 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FEL01_RS21710 (FEL01_22345)	-	4363640..4364047 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
FEL01_RS21715 (FEL01_22350)	rpoS	4364167..4365159 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEL01_RS21720 (FEL01_22355)	nlpD	4365222..4366316 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
FEL01_RS21725 (FEL01_22360)	pcm	4366501..4367127 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEL01_RS21730 (FEL01_22365)	surE	4367121..4367882 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FEL01_RS21735 (FEL01_22370)	truD	4367863..4368912 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
FEL01_RS21740 (FEL01_22375)	ispF	4368909..4369388 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEL01_RS21745 (FEL01_22380)	ispD	4369388..4370098 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321097 FEL01_RS21715 WP_000081550.1 4364167..4365159(-) (rpoS) [Escherichia coli strain F1 E4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321097 FEL01_RS21715 WP_000081550.1 4364167..4365159(-) (rpoS) [Escherichia coli strain F1 E4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715