Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   D9C22_RS13125 Genome accession   NZ_CP033064
Coordinates   2515115..2515498 (-) Length   127 a.a.
NCBI ID   WP_041850015.1    Uniprot ID   -
Organism   Bacillus sp. WR11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2510115..2520498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C22_RS13085 (D9C22_13095) sinI 2511049..2511222 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  D9C22_RS13090 (D9C22_13100) sinR 2511256..2511591 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  D9C22_RS13095 (D9C22_13105) tasA 2511684..2512469 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  D9C22_RS13100 (D9C22_13110) - 2512533..2513105 (-) 573 WP_003246088.1 signal peptidase I -
  D9C22_RS13105 (D9C22_13115) tapA 2513089..2513850 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  D9C22_RS13110 (D9C22_13120) - 2514122..2514448 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  D9C22_RS13115 (D9C22_13125) - 2514490..2514669 (-) 180 WP_003230176.1 YqzE family protein -
  D9C22_RS13120 (D9C22_13130) comGG 2514740..2515114 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  D9C22_RS13125 (D9C22_13135) comGF 2515115..2515498 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  D9C22_RS13130 (D9C22_13140) comGE 2515524..2515871 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  D9C22_RS13135 (D9C22_13145) comGD 2515855..2516286 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  D9C22_RS13140 (D9C22_13150) comGC 2516276..2516572 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  D9C22_RS13145 (D9C22_13155) comGB 2516586..2517623 (-) 1038 WP_041850016.1 comG operon protein ComGB Machinery gene
  D9C22_RS13150 (D9C22_13160) comGA 2517610..2518680 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  D9C22_RS13160 (D9C22_13170) corA 2519091..2520044 (-) 954 WP_029317911.1 magnesium transporter CorA -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14250.41 Da        Isoelectric Point: 6.4838

>NTDB_id=321073 D9C22_RS13125 WP_041850015.1 2515115..2515498(-) (comGF) [Bacillus sp. WR11]
MLISGSLAAIIHLFLSRQQEHDGFTQQEWMISIEQMMNECKESQAVKTAEHGSVLICTNLSGQDIRFDIYHSMIRKRVDG
KGHVPILDHIAAMKADIKNGVVLLKIESEDQKVYQTAFPVYSYLGGG

Nucleotide


Download         Length: 384 bp        

>NTDB_id=321073 D9C22_RS13125 WP_041850015.1 2515115..2515498(-) (comGF) [Bacillus sp. WR11]
TTGCTCATATCAGGATCGTTAGCTGCGATTATCCATCTGTTTTTGTCTCGACAGCAGGAACATGACGGTTTCACACAGCA
AGAATGGATGATTTCTATAGAACAGATGATGAATGAATGCAAGGAGTCACAGGCAGTTAAGACAGCCGAGCATGGGAGCG
TGTTAATCTGCACCAATCTTTCCGGACAAGACATCCGTTTTGACATTTATCATTCAATGATAAGAAAAAGAGTGGATGGC
AAAGGGCATGTTCCGATTTTAGATCATATTGCTGCCATGAAAGCTGATATTAAAAATGGTGTTGTTTTGCTGAAAATTGA
GAGTGAGGACCAAAAAGTGTATCAAACAGCTTTTCCGGTCTATTCGTATTTAGGAGGAGGGTGA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(16-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Bacillus subtilis subsp. subtilis str. 168

98.425

100

0.984

Multiple sequence alignment