Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FEL06_RS21360 Genome accession   NZ_CP040305
Coordinates   4279538..4280275 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain HB6     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4274538..4285275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL06_RS21345 (FEL06_22000) clpC 4274992..4277565 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  FEL06_RS21350 (FEL06_22005) yfiH 4277695..4278426 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  FEL06_RS21355 (FEL06_22010) rluD 4278423..4279403 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FEL06_RS21360 (FEL06_22015) comL 4279538..4280275 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  FEL06_RS21365 (FEL06_22020) raiA 4280546..4280887 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  FEL06_RS21370 (FEL06_22025) pheL 4280991..4281038 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  FEL06_RS21375 (FEL06_22030) pheA 4281137..4282297 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  FEL06_RS21380 (FEL06_22035) tyrA 4282340..4283461 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  FEL06_RS21385 (FEL06_22040) aroF 4283472..4284542 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  FEL06_RS21390 (FEL06_22045) yfiL 4284752..4285117 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=321014 FEL06_RS21360 WP_000197686.1 4279538..4280275(+) (comL) [Escherichia coli strain HB6]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=321014 FEL06_RS21360 WP_000197686.1 4279538..4280275(+) (comL) [Escherichia coli strain HB6]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376