Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   D9779_RS18180 Genome accession   NZ_CP033052
Coordinates   3501175..3501864 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus vallismortis strain Bac111     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3496175..3506864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS18145 flgN 3496378..3496860 (-) 483 WP_121643386.1 flagellar protein FlgN -
  D9779_RS18150 flgM 3496875..3497141 (-) 267 WP_010328774.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9779_RS18155 - 3497221..3497640 (-) 420 WP_010328775.1 TIGR03826 family flagellar region protein -
  D9779_RS18160 comFC 3497712..3498434 (-) 723 WP_121643387.1 double zinc ribbon domain-containing protein Machinery gene
  D9779_RS18165 - 3498398..3498694 (-) 297 WP_010328777.1 late competence development ComFB family protein -
  D9779_RS18170 comFA 3498754..3500127 (-) 1374 WP_121643388.1 ATP-dependent helicase ComFA Machinery gene
  D9779_RS18175 - 3500232..3501077 (-) 846 WP_121643389.1 DegV family protein -
  D9779_RS18180 degU 3501175..3501864 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9779_RS18185 degS 3501947..3503104 (-) 1158 WP_010328781.1 two-component sensor histidine kinase DegS Regulator
  D9779_RS18190 - 3503320..3503973 (+) 654 WP_121643390.1 YigZ family protein -
  D9779_RS18195 - 3503973..3505085 (+) 1113 WP_121643391.1 LCP family protein -
  D9779_RS18200 - 3505158..3506234 (-) 1077 WP_010328783.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=320890 D9779_RS18180 WP_003219701.1 3501175..3501864(-) (degU) [Bacillus vallismortis strain Bac111]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=320890 D9779_RS18180 WP_003219701.1 3501175..3501864(-) (degU) [Bacillus vallismortis strain Bac111]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGGGACGACGGAGATGAAGCGGCTCGTATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACCGGCGCGAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGAGGTTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTTCGCCGTCTTGCAACAAGCGGAGTTTCTGCACACCCTCAGCATGAGGTCTACCCTGAAATCCGC
AGACCATTACATATCTTAACTAGACGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATCGG
TGAATCATTGTTTATCAGTGAGAAAACCGTCAAAAACCATGTGAGCAATATCTTGCAGAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment