Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   D9779_RS18170 Genome accession   NZ_CP033052
Coordinates   3498754..3500127 (-) Length   457 a.a.
NCBI ID   WP_121643388.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493754..3505127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS18135 flgL 3493930..3494826 (-) 897 WP_121643385.1 flagellar hook-associated protein FlgL -
  D9779_RS18140 flgK 3494836..3496359 (-) 1524 WP_010328772.1 flagellar hook-associated protein FlgK -
  D9779_RS18145 flgN 3496378..3496860 (-) 483 WP_121643386.1 flagellar protein FlgN -
  D9779_RS18150 flgM 3496875..3497141 (-) 267 WP_010328774.1 flagellar biosynthesis anti-sigma factor FlgM -
  D9779_RS18155 - 3497221..3497640 (-) 420 WP_010328775.1 TIGR03826 family flagellar region protein -
  D9779_RS18160 comFC 3497712..3498434 (-) 723 WP_121643387.1 double zinc ribbon domain-containing protein Machinery gene
  D9779_RS18165 - 3498398..3498694 (-) 297 WP_010328777.1 late competence development ComFB family protein -
  D9779_RS18170 comFA 3498754..3500127 (-) 1374 WP_121643388.1 ATP-dependent helicase ComFA Machinery gene
  D9779_RS18175 - 3500232..3501077 (-) 846 WP_121643389.1 DegV family protein -
  D9779_RS18180 degU 3501175..3501864 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  D9779_RS18185 degS 3501947..3503104 (-) 1158 WP_010328781.1 two-component sensor histidine kinase DegS Regulator
  D9779_RS18190 - 3503320..3503973 (+) 654 WP_121643390.1 YigZ family protein -
  D9779_RS18195 - 3503973..3505085 (+) 1113 WP_121643391.1 LCP family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 52174.20 Da        Isoelectric Point: 9.9533

>NTDB_id=320889 D9779_RS18170 WP_121643388.1 3498754..3500127(-) (comFA) [Bacillus vallismortis strain Bac111]
MNMTFSKELQQTLQGRHLLRTEVPFSDELIEWHIKNGYIGAQNSIFKNKREYRCNRCGQNDQRYFSNYHSSGKKQLYCRS
CVMMGRVSEEVPLYSWKEEDELHWKPIKLTWNGELSRGQQKAANVLIEAISRKKELLIWAVCGAGKTEILFPGIESALNQ
GLRVCIATPRTDVVLELAPRLKAAFQGADIAALYGSSEDKGRLSPLVISTTHQLLRYKDAFDVIIVDEVDAFPYSADQTL
QFAVQKAKKKISTLVYLSATPSKELKRKTMNGQLHSIRIPARHHQKPLPEPRFLWCGNWKKKLTRNKIPPAVKRWIEFHV
KEGRPVFLFVPSVSVLEKAAACFKDIHCRTASVHAEDKDRKEKVQQFRDGQLDLLITTTILERGVTVHKVQTGILGAESP
IFTESALVQIAGRTGRHKEYADGDVIFFHYGKTKSMLDARKHIKEMNALAEKNERTD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=320889 D9779_RS18170 WP_121643388.1 3498754..3500127(-) (comFA) [Bacillus vallismortis strain Bac111]
ATGAACATGACTTTCTCAAAAGAATTACAGCAGACGCTTCAAGGCCGTCATTTGCTCAGAACTGAAGTCCCATTTTCCGA
TGAGCTGATTGAATGGCATATCAAGAACGGTTATATTGGCGCTCAAAACTCAATATTCAAAAATAAACGGGAGTATAGGT
GTAATAGGTGCGGCCAAAATGATCAGCGTTATTTTTCTAATTATCACTCATCTGGAAAGAAGCAGCTGTATTGCCGTTCC
TGTGTCATGATGGGAAGAGTAAGTGAGGAAGTGCCTTTATATTCATGGAAAGAGGAGGATGAACTCCATTGGAAGCCTAT
CAAGCTGACTTGGAATGGCGAGCTCTCAAGGGGACAGCAAAAAGCCGCCAATGTCTTAATTGAAGCAATATCCAGAAAAA
AAGAACTCCTCATCTGGGCAGTTTGCGGCGCTGGCAAAACAGAGATATTATTCCCCGGTATAGAGTCAGCATTAAATCAA
GGACTGCGTGTATGTATTGCGACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGGCTCAAGGCCGCTTTTCAGGG
CGCTGACATTGCGGCACTATACGGGAGCAGCGAGGACAAAGGGCGTTTATCTCCTCTTGTGATTTCCACTACACATCAGC
TTTTGCGATATAAAGACGCATTCGATGTTATCATCGTTGATGAAGTTGATGCTTTTCCGTATTCCGCTGATCAAACTCTT
CAATTCGCTGTTCAAAAAGCCAAAAAGAAAATCAGCACCCTGGTTTATTTAAGTGCAACACCTTCTAAAGAACTAAAAAG
AAAAACAATGAACGGACAGCTGCATTCAATTCGCATTCCAGCAAGACACCACCAGAAACCTCTTCCAGAACCGCGTTTTC
TATGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAATAAAATCCCGCCAGCGGTAAAAAGATGGATAGAGTTTCATGTG
AAAGAAGGGAGGCCTGTGTTTTTATTTGTTCCCTCCGTTTCTGTTTTAGAAAAGGCAGCGGCCTGCTTTAAAGATATTCA
TTGCCGAACGGCGTCTGTTCATGCGGAAGATAAGGACAGAAAAGAAAAAGTACAGCAATTCAGAGATGGTCAGCTTGATC
TTTTAATCACAACAACAATATTAGAAAGAGGCGTTACGGTTCATAAGGTGCAAACAGGGATATTAGGGGCGGAATCACCT
ATCTTTACGGAAAGCGCACTTGTGCAAATCGCAGGAAGAACCGGCCGGCATAAAGAATACGCGGACGGCGATGTTATTTT
CTTTCATTACGGAAAAACAAAGAGCATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATGCTTTGGCGGAAAAAAATG
AAAGAACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(114-262)

Helicase conserved C-terminal domain (Helicase_C)

(320-417)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

87.939

99.781

0.877

Multiple sequence alignment