Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   D9779_RS06995 Genome accession   NZ_CP033052
Coordinates   1370135..1371088 (+) Length   317 a.a.
NCBI ID   WP_121642312.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1365135..1376088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS06970 argF 1366964..1367923 (+) 960 WP_121642310.1 ornithine carbamoyltransferase -
  D9779_RS06975 - 1368008..1368187 (+) 180 WP_010329358.1 YjzC family protein -
  D9779_RS06980 - 1368236..1368430 (-) 195 WP_010329359.1 YjzD family protein -
  D9779_RS06985 - 1368678..1369412 (+) 735 WP_121642311.1 hypothetical protein -
  D9779_RS06990 - 1369493..1370044 (+) 552 WP_010329361.1 hypothetical protein -
  D9779_RS06995 med 1370135..1371088 (+) 954 WP_121642312.1 transcriptional regulator Med Regulator
  D9779_RS07000 comZ 1371103..1371294 (+) 192 WP_010329363.1 ComG operon transcriptional repressor ComZ Regulator
  D9779_RS07005 - 1371324..1371527 (-) 204 WP_082246335.1 hypothetical protein -
  D9779_RS07010 fabH 1371716..1372654 (+) 939 WP_010329365.1 beta-ketoacyl-ACP synthase III -
  D9779_RS07015 fabF 1372677..1373918 (+) 1242 WP_121642313.1 beta-ketoacyl-ACP synthase II -
  D9779_RS07020 - 1373994..1374779 (+) 786 WP_010329367.1 DUF2268 domain-containing protein -
  D9779_RS07025 appD 1374970..1375956 (+) 987 WP_121642314.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35294.82 Da        Isoelectric Point: 4.6608

>NTDB_id=320846 D9779_RS06995 WP_121642312.1 1370135..1371088(+) (med) [Bacillus vallismortis strain Bac111]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTDEDIINAIDD
FHKRGVNLLYGHGSEYAEVFNLVSEDYPDMEFVISNAKAKGDNVTSVHFSGEAMGFFGGMTAAHLSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPNIEVNTKYTAHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSEL
GENTVLTSTVQNVDKAYEIIAEQFDKGSLEGGDHYYDLKTGVVEMGTFSPLVDKDFQQRIDKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320846 D9779_RS06995 WP_121642312.1 1370135..1371088(+) (med) [Bacillus vallismortis strain Bac111]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTAAGCGGATGTGGACAAACTCCGTTTAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAACGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCAAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGATGAAGATATCATAAATGCGATTGATGAT
TTTCATAAGCGGGGCGTCAATCTTCTCTATGGCCACGGGAGTGAATACGCAGAGGTGTTTAACTTGGTCAGCGAAGATTA
TCCGGATATGGAATTTGTCATTTCTAATGCGAAAGCGAAAGGGGATAATGTGACAAGTGTCCATTTCAGCGGCGAGGCAA
TGGGCTTTTTTGGAGGAATGACGGCTGCCCATTTGTCGAAAACAAATCAGGTCGGCGTGATCGCTTCCTTTACATGGCAG
CCAGAGGTTGACGGTTTTATCAAAGGGGCCAAATATGAAAATCCGAATATAGAAGTAAACACGAAATATACGGCTCATTG
GGATGATGATACGACGGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTCATTCAGCAGATTAAAAAAGACGGCCTTTATGCCATCGGCTACGTCACAGATCAATCAGAACTG
GGCGAAAATACCGTGTTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATCGCTGAGCAATTCGACAAAGG
CTCCCTTGAAGGCGGCGACCATTACTACGACCTGAAAACCGGCGTTGTTGAAATGGGAACATTCAGCCCGCTTGTCGATA
AAGACTTTCAGCAAAGAATCGACAAGCTGATCAAAACGTACAACAAAACAGGCGAACTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

95.899

100

0.959

Multiple sequence alignment