Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D9779_RS01310 Genome accession   NZ_CP033052
Coordinates   242087..243463 (+) Length   458 a.a.
NCBI ID   WP_121641710.1    Uniprot ID   A0AAP3CKX3
Organism   Bacillus vallismortis strain Bac111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237087..248463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS01290 ctsR 237440..237904 (+) 465 WP_010327701.1 transcriptional regulator CtsR -
  D9779_RS01295 mcsA 237918..238475 (+) 558 WP_010327702.1 protein-arginine kinase activator protein McsA -
  D9779_RS01300 - 238475..239566 (+) 1092 WP_121641708.1 protein arginine kinase -
  D9779_RS01305 clpC 239563..241995 (+) 2433 WP_121641709.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  D9779_RS01310 radA 242087..243463 (+) 1377 WP_121641710.1 DNA repair protein RadA Machinery gene
  D9779_RS01315 disA 243467..244549 (+) 1083 WP_039076376.1 DNA integrity scanning diadenylate cyclase DisA -
  D9779_RS01320 - 244664..245764 (+) 1101 WP_010327707.1 PIN/TRAM domain-containing protein -
  D9779_RS01325 ispD 245779..246477 (+) 699 WP_121641711.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D9779_RS01330 ispF 246470..246946 (+) 477 WP_010327709.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49544.05 Da        Isoelectric Point: 7.6838

>NTDB_id=320830 D9779_RS01310 WP_121641710.1 242087..243463(+) (radA) [Bacillus vallismortis strain Bac111]
MAKTKSKFICQSCGYESPKWMGKCPGCGAWNTMVEEMMKKAPANRRAAFSHSVQTVQKPSPITTIETSEEPRVKTQLGEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLSDSSNSVLYISGEESVKQTKLRADRLGINNPSLHVLSETDMEYIS
SAIEEMNPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTKGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGSAGSSITASMEGTRPILVEIQALISPTSF
GNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAIAISIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMIIPAANLEGWTKPKGIEVIGVANVAEALRTSLGG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=320830 D9779_RS01310 WP_121641710.1 242087..243463(+) (radA) [Bacillus vallismortis strain Bac111]
ATGGCTAAAACAAAATCGAAATTCATCTGCCAATCCTGCGGTTACGAGTCTCCAAAATGGATGGGGAAATGTCCGGGCTG
CGGTGCTTGGAATACAATGGTGGAAGAAATGATGAAAAAGGCACCGGCCAATCGGAGAGCGGCTTTTTCTCATTCTGTTC
AAACTGTACAGAAACCTTCACCTATTACAACAATTGAAACATCAGAAGAACCCCGTGTTAAAACCCAGCTTGGCGAATTT
AACAGGGTGCTCGGCGGGGGAGTCGTTAAAGGCTCACTCGTGTTAATCGGCGGTGACCCCGGTATCGGAAAGTCCACGTT
GTTACTGCAAGTTTCAGCTCAATTATCAGATTCATCGAACAGTGTGTTGTACATTTCGGGAGAAGAATCGGTTAAACAAA
CGAAACTGAGAGCAGATCGTCTCGGCATTAATAATCCGTCGCTGCATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATAGAAGAGATGAATCCAGCGTTTGTCGTTGTTGACTCTATTCAAACGGTTTACCAAAGCGATATCACATCGGC
TCCCGGCAGTGTGTCACAGGTCAGAGAGTGTACGGCTGAGCTGATGAAAATTGCCAAAACAAAAGGCATTCCGATCTTTA
TCGTAGGACACGTAACAAAAGAAGGGTCTATTGCAGGGCCGAGATTGCTGGAGCATATGGTTGACACTGTTTTATACTTT
GAAGGAGAACGTCACCATACTTTTCGTATATTGAGAGCAGTAAAAAACCGTTTTGGTTCTACAAACGAAATGGGTATTTT
CGAAATGCGTGAAGAGGGACTCACCGAGGTTTTGAACCCTTCAGAAATTTTCTTGGAAGAGCGCTCAGCAGGATCTGCTG
GCTCGAGCATAACTGCCTCTATGGAAGGCACGAGGCCGATTCTCGTTGAAATTCAGGCGCTCATCTCGCCGACAAGTTTT
GGAAATCCGCGGCGTATGGCAACGGGTATAGACCATAACAGGGTTTCGCTGTTAATGGCTGTGTTAGAAAAAAGAGTTGG
GCTGCTGCTGCAAAATCAGGATGCCTATTTGAAAGTAGCTGGCGGCGTAAAGCTTGATGAACCGGCAATTGATCTTGCCA
TTGCGATCAGCATCGCGTCCAGTTTTAGAGACACACCCCCAAATCCTGCCGATTGTTTTATAGGTGAAGTGGGATTAACC
GGAGAAGTCCGGCGGGTTTCTAGAATTGAACAGCGTGTGAAAGAAGCGGCTAAGCTTGGTTTCAAACGCATGATCATACC
CGCGGCAAATCTGGAAGGCTGGACAAAACCAAAAGGGATTGAGGTTATCGGAGTAGCAAATGTTGCAGAGGCGCTTCGTA
CTTCATTAGGAGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-222)

Subunit ChlI of Mg-chelatase (ChlI)

(365-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

98.472

100

0.985
  radA Streptococcus pneumoniae Rx1

63.355

98.908

0.627
  radA Streptococcus pneumoniae D39

63.355

98.908

0.627
  radA Streptococcus pneumoniae R6

63.355

98.908

0.627
  radA Streptococcus pneumoniae TIGR4

63.355

98.908

0.627
  radA Streptococcus mitis NCTC 12261

63.355

98.908

0.627
  radA Streptococcus mitis SK321

63.135

98.908

0.624

Multiple sequence alignment