Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | D9779_RS01305 | Genome accession | NZ_CP033052 |
| Coordinates | 239563..241995 (+) | Length | 810 a.a. |
| NCBI ID | WP_121641709.1 | Uniprot ID | A0AAP3FS97 |
| Organism | Bacillus vallismortis strain Bac111 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 234563..246995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9779_RS01290 | ctsR | 237440..237904 (+) | 465 | WP_010327701.1 | transcriptional regulator CtsR | - |
| D9779_RS01295 | mcsA | 237918..238475 (+) | 558 | WP_010327702.1 | protein-arginine kinase activator protein McsA | - |
| D9779_RS01300 | - | 238475..239566 (+) | 1092 | WP_121641708.1 | protein arginine kinase | - |
| D9779_RS01305 | clpC | 239563..241995 (+) | 2433 | WP_121641709.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| D9779_RS01310 | radA | 242087..243463 (+) | 1377 | WP_121641710.1 | DNA repair protein RadA | Machinery gene |
| D9779_RS01315 | disA | 243467..244549 (+) | 1083 | WP_039076376.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| D9779_RS01320 | - | 244664..245764 (+) | 1101 | WP_010327707.1 | PIN/TRAM domain-containing protein | - |
| D9779_RS01325 | ispD | 245779..246477 (+) | 699 | WP_121641711.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| D9779_RS01330 | ispF | 246470..246946 (+) | 477 | WP_010327709.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90048.51 Da Isoelectric Point: 5.9300
>NTDB_id=320829 D9779_RS01305 WP_121641709.1 239563..241995(+) (clpC) [Bacillus vallismortis strain Bac111]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALEALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
ASWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALEALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
ASWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=320829 D9779_RS01305 WP_121641709.1 239563..241995(+) (clpC) [Bacillus vallismortis strain Bac111]
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTATTGGCGCTTGCACAGGAAGAAGCACTTCGATTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGAGAAGGGATTGCTGCTAAAGCTCTAGAAGCGCTTG
GACTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGACAGGAAATGTCCCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGTCATTCGTATGTTGGAACAGAACA
TATTCTTCTTGGGCTGATTCGCGAAGGAGAAGGTGTTGCTGCAAGAGTTCTGAATAATCTTGGTGTCAGCTTAAATAAAG
CAAGACAGCAAGTCCTCCAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGATAGCTTGGCAAGGGACTTAACTGCTATTGCGAAGGAAGACAGCCTAGATCCTGTAATCGGGAGAAGCAA
GGAAATTCAGCGTGTGATCGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTACTCATTGGTGAGCCAGGTGTAGGTA
AAACGGCAATCGCGGAAGGGTTGGCACAGCAAATTATTAATAACGAGGTTCCAGAAATCTTACGTGATAAACGTGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACTAAATATCGCGGTGAATTTGAGGATCGCCTGAAGAAAGTCATGGATGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTCCATACCTTAATCGGAGCGGGCGGAGCAGAGGGTGCCA
TTGATGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGCGAACTTCAATGTATTGGCGCGACGACTCTTGATGAATAC
CGTAAATATATTGAAAAAGATGCAGCATTGGAACGACGTTTTCAGCCGATCCAGGTTGATCAGCCATCTGCAGATGAAAG
TATTCAAATTTTACAAGGTCTGCGTGACAGATATGAAGCCCACCACCGTGTTTCTATCACTGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCCGATAGATATATTTCTGACCGCTTCCTTCCAGATAAAGCAATTGACTTGATTGACGAAGCGGGCTCG
AAGGTTAGACTCCGCTCCTTTACAACGCCTCCTAACTTAAAAGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCCGTCCAAAGCCAAGAGTTTGAAAAAGCGGCTTCCTTGCGTGATACTGAGCAGCGCTTGCGCGAGCAAGTAG
AGGATACGAAAAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
GCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAGAGCATTCTTCA
CTCCCGTGTCATCGGCCAGGATGAAGCGGTTGTCGCCGTTGCAAAAGCAGTCAGACGCGCAAGAGCAGGGTTAAAAGACC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTGGGGAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCTATTTTCGGTGATGAAGAAGCCATGATCAGAATTGATATGTCGGAATACATGGAAAAACACTCTACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATATGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAAAAAGCACACCCTGATGTCTTCAATATTCTGCTGCAAGTTCTTGAAGATGGGCGATTGACG
GATTCTAAAGGACGTACAGTCGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAATGTCCAAGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGTGAACTGA
AACGCGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATCGTCTTCCATTCACTTGAGAAAAAACACCTGACT
GAAATCGTTTCATTAATGTCTGATCAATTGACGAAACGCTTGAAAGAGCAGGACCTTTCTATCGAATTGACAGATGCTGC
AAAAGCAAAAGTAGCGGAAGAGGGTGTTGATCTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTAAGAGGAAATATTCATAAAGGACAGCACATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTATTGGCGCTTGCACAGGAAGAAGCACTTCGATTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGAGAAGGGATTGCTGCTAAAGCTCTAGAAGCGCTTG
GACTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGACAGGAAATGTCCCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGTCATTCGTATGTTGGAACAGAACA
TATTCTTCTTGGGCTGATTCGCGAAGGAGAAGGTGTTGCTGCAAGAGTTCTGAATAATCTTGGTGTCAGCTTAAATAAAG
CAAGACAGCAAGTCCTCCAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGATAGCTTGGCAAGGGACTTAACTGCTATTGCGAAGGAAGACAGCCTAGATCCTGTAATCGGGAGAAGCAA
GGAAATTCAGCGTGTGATCGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTACTCATTGGTGAGCCAGGTGTAGGTA
AAACGGCAATCGCGGAAGGGTTGGCACAGCAAATTATTAATAACGAGGTTCCAGAAATCTTACGTGATAAACGTGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACTAAATATCGCGGTGAATTTGAGGATCGCCTGAAGAAAGTCATGGATGA
AATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTCCATACCTTAATCGGAGCGGGCGGAGCAGAGGGTGCCA
TTGATGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGCGAACTTCAATGTATTGGCGCGACGACTCTTGATGAATAC
CGTAAATATATTGAAAAAGATGCAGCATTGGAACGACGTTTTCAGCCGATCCAGGTTGATCAGCCATCTGCAGATGAAAG
TATTCAAATTTTACAAGGTCTGCGTGACAGATATGAAGCCCACCACCGTGTTTCTATCACTGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCCGATAGATATATTTCTGACCGCTTCCTTCCAGATAAAGCAATTGACTTGATTGACGAAGCGGGCTCG
AAGGTTAGACTCCGCTCCTTTACAACGCCTCCTAACTTAAAAGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCCGTCCAAAGCCAAGAGTTTGAAAAAGCGGCTTCCTTGCGTGATACTGAGCAGCGCTTGCGCGAGCAAGTAG
AGGATACGAAAAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
GCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACGGAAACAGATAAGCTTCTCAATATGGAGAGCATTCTTCA
CTCCCGTGTCATCGGCCAGGATGAAGCGGTTGTCGCCGTTGCAAAAGCAGTCAGACGCGCAAGAGCAGGGTTAAAAGACC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTGGGGAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCTATTTTCGGTGATGAAGAAGCCATGATCAGAATTGATATGTCGGAATACATGGAAAAACACTCTACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATATGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAAAAAGCACACCCTGATGTCTTCAATATTCTGCTGCAAGTTCTTGAAGATGGGCGATTGACG
GATTCTAAAGGACGTACAGTCGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGGGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAATGTCCAAGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGTGAACTGA
AACGCGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATCGTCTTCCATTCACTTGAGAAAAAACACCTGACT
GAAATCGTTTCATTAATGTCTGATCAATTGACGAAACGCTTGAAAGAGCAGGACCTTTCTATCGAATTGACAGATGCTGC
AAAAGCAAAAGTAGCGGAAGAGGGTGTTGATCTGGAATACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTAAGAGGAAATATTCATAAAGGACAGCACATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
99.136 |
100 |
0.991 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.374 |
99.012 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.473 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus pneumoniae Rx1 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae D39 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae TIGR4 |
44.994 |
99.877 |
0.449 |
| clpC | Streptococcus mutans UA159 |
43.462 |
100 |
0.443 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.523 |
87.778 |
0.426 |
| clpE | Streptococcus mutans UA159 |
53.005 |
80.123 |
0.425 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.08 |
80.123 |
0.417 |
| clpE | Streptococcus pneumoniae Rx1 |
52.08 |
80.123 |
0.417 |
| clpE | Streptococcus pneumoniae D39 |
52.08 |
80.123 |
0.417 |
| clpE | Streptococcus pneumoniae R6 |
52.08 |
80.123 |
0.417 |