Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D9778_RS10925 Genome accession   NZ_CP033049
Coordinates   2106771..2108585 (-) Length   604 a.a.
NCBI ID   WP_019378857.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain Bac324     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 2101771..2113585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9778_RS10895 - 2102054..2102857 (-) 804 WP_019378862.1 NAD kinase -
  D9778_RS10900 - 2102893..2103501 (-) 609 WP_019378861.1 GTP pyrophosphokinase -
  D9778_RS10905 - 2103814..2104380 (+) 567 WP_071648455.1 CYTH domain-containing protein -
  D9778_RS10910 - 2104529..2104909 (+) 381 WP_019378859.1 globin -
  D9778_RS10915 - 2104927..2105820 (+) 894 WP_019378858.1 ClpXP adapter SpxH family protein -
  D9778_RS10925 pepF 2106771..2108585 (-) 1815 WP_019378857.1 oligoendopeptidase F Regulator
  D9778_RS10930 - 2108691..2109881 (-) 1191 WP_121615571.1 competence protein CoiA -
  D9778_RS10940 mecA 2110579..2111274 (-) 696 WP_026041500.1 adaptor protein MecA -
  D9778_RS10945 spxA 2111714..2112109 (-) 396 WP_019378978.1 transcriptional regulator SpxA -
  D9778_RS10950 - 2112477..2113406 (+) 930 WP_121615573.1 c-type cytochrome -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69718.53 Da        Isoelectric Point: 4.7154

>NTDB_id=320799 D9778_RS10925 WP_019378857.1 2106771..2108585(-) (pepF) [Virgibacillus halodenitrificans strain Bac324]
MAKSKTKALPKREELPVERTWKLEDIFATDEIWEKELKQLQTDIPKIEAYQGKLAESSDQLLGVLKLQDELSERLGKLYT
YAHMRYDQDTTNSWYQGLNAQAENVLTIASSAMSFIVPEILTMEETKLKNFLEENKELQAYQKTLDEINRQRPHILSEKE
EALLAEASDPMSSASQTFGMLNNADLTFPTIKNEDGEEVDLTHGRYIGFLESKDRSVREAAFKGMYDTYGKFKNTFSSTL
GGNIKKDNFYAKVRNYESARQSALDDNNIPEKVYDNLVEAVNEKLPLLHRYAELRKKVLKLDELHMYDLFTPLVQDIDMK
IPYEEAQKNVLEALAPLGEEYVDILKEGYENRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDMFTLAHELGHSV
HSYYTRKFQPFRYGNYSIFVAEVASTTNEALLNDYMLKNVEDEKQKLYLLNHFLEGFRGTVFRQTMFAEFEHDIHVRAQN
GEALTADKLTELYYDLNKKYFGDAVVSDEEIGLEWARIPHFYYNYYVYQYATGYSAAMALSNNILHGKEGAVTRYLDFLK
AGSSDYPIEVLQKAGVDMTSKQPILDALDLFEEKLNEMEKLLLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=320799 D9778_RS10925 WP_019378857.1 2106771..2108585(-) (pepF) [Virgibacillus halodenitrificans strain Bac324]
ATGGCAAAATCAAAAACAAAAGCACTACCAAAGCGTGAAGAACTACCAGTAGAACGCACATGGAAATTAGAGGATATTTT
CGCTACAGATGAAATATGGGAAAAAGAATTAAAACAACTACAAACTGATATTCCCAAAATAGAAGCGTATCAAGGGAAAC
TGGCTGAGTCATCCGATCAGTTGCTTGGTGTACTAAAGCTGCAAGATGAATTATCTGAGCGATTAGGAAAGCTGTATACA
TATGCGCATATGCGCTATGACCAGGATACGACCAATTCATGGTATCAAGGACTAAATGCGCAGGCTGAAAATGTACTGAC
CATCGCTTCAAGTGCAATGAGTTTTATCGTTCCGGAAATTTTAACGATGGAGGAAACGAAGCTAAAGAACTTTTTAGAAG
AGAACAAAGAGCTACAGGCATATCAAAAAACATTAGACGAAATTAATCGGCAGCGGCCACATATCTTGAGCGAAAAAGAA
GAGGCGTTACTTGCTGAAGCATCTGATCCTATGTCAAGTGCTTCTCAAACATTCGGTATGTTGAATAATGCGGATTTAAC
GTTCCCAACAATTAAAAATGAAGACGGGGAAGAAGTTGACTTAACGCATGGCAGATATATTGGTTTTCTTGAATCAAAGG
ACCGAAGCGTAAGGGAAGCAGCTTTTAAAGGAATGTATGATACCTATGGGAAATTTAAGAATACTTTTTCTTCTACACTA
GGTGGTAATATTAAGAAAGATAACTTTTATGCTAAGGTACGTAATTATGAATCTGCAAGGCAGTCTGCTTTAGATGATAA
TAATATACCTGAAAAAGTGTACGATAATTTAGTTGAAGCTGTTAATGAAAAACTTCCATTACTTCATCGCTATGCGGAAC
TAAGAAAGAAAGTATTAAAACTCGATGAATTGCATATGTACGATCTATTTACACCACTTGTCCAGGATATAGATATGAAG
ATTCCATATGAAGAAGCACAGAAAAATGTTTTAGAAGCACTCGCTCCACTTGGAGAAGAATATGTAGATATTCTTAAAGA
AGGTTATGAGAATCGTTGGATTGATGTGGAGGAAAATAAAGGAAAACGAAGTGGTGCTTATTCTTCAGGAGCATATGGTA
CCAACCCATATATATTATTAAATTGGCAGGATAACGTAAATGATATGTTTACACTAGCTCACGAGCTCGGGCATTCGGTT
CATAGTTACTATACACGTAAATTTCAGCCATTCCGTTATGGAAACTATTCTATTTTTGTGGCAGAGGTTGCATCCACAAC
GAATGAAGCTTTGTTAAATGATTATATGTTGAAAAATGTAGAGGATGAAAAACAAAAACTCTATTTGTTAAATCACTTTT
TAGAAGGATTCCGTGGTACTGTATTCCGTCAGACGATGTTTGCAGAATTTGAACATGATATTCATGTAAGAGCACAAAAT
GGCGAAGCTTTAACTGCTGATAAGTTAACCGAACTTTATTATGATCTTAACAAAAAATACTTCGGTGATGCAGTCGTTTC
AGATGAGGAAATCGGCTTAGAATGGGCGAGAATTCCACATTTTTATTACAATTACTATGTGTATCAATATGCCACAGGTT
ATTCTGCTGCAATGGCCCTATCAAATAATATTTTACATGGTAAAGAAGGAGCTGTAACTCGTTACCTTGATTTTCTGAAG
GCGGGAAGTAGTGACTATCCAATCGAGGTACTTCAAAAAGCAGGTGTGGATATGACATCCAAACAACCTATTCTTGATGC
ACTGGATCTATTCGAAGAAAAACTAAATGAGATGGAAAAACTTTTATTGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

98.179

0.49

Multiple sequence alignment