Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   FEF05_RS07920 Genome accession   NZ_CP040243
Coordinates   1574619..1576457 (-) Length   612 a.a.
NCBI ID   WP_149351022.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1569619..1581457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS07895 (FEF05_07900) - 1570073..1570912 (-) 840 WP_021109740.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  FEF05_RS07900 (FEF05_07905) ampD 1570970..1571536 (+) 567 WP_010787066.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FEF05_RS07905 (FEF05_07910) - 1571529..1572437 (-) 909 WP_021109738.1 lysine exporter LysO family protein -
  FEF05_RS07910 (FEF05_07915) dinB 1572581..1573651 (+) 1071 WP_035495819.1 DNA polymerase IV -
  FEF05_RS07915 (FEF05_07920) htpX 1573757..1574608 (+) 852 WP_010787063.1 protease HtpX -
  FEF05_RS07920 (FEF05_07925) uvrC 1574619..1576457 (-) 1839 WP_149351022.1 excinuclease ABC subunit UvrC Machinery gene
  FEF05_RS07925 (FEF05_07930) pgsA 1576490..1577038 (-) 549 WP_005714153.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FEF05_RS07930 (FEF05_07935) modB 1577194..1577895 (+) 702 WP_035491186.1 molybdate ABC transporter permease subunit -
  FEF05_RS07935 (FEF05_07940) modC 1577895..1578956 (+) 1062 WP_149351023.1 molybdenum ABC transporter ATP-binding protein ModC -
  FEF05_RS07940 (FEF05_07945) sodA 1579174..1579794 (+) 621 WP_005714158.1 superoxide dismutase [Mn] -
  FEF05_RS12570 (FEF05_07950) - 1579843..1580146 (-) 304 Protein_1546 hypothetical protein -
  FEF05_RS07950 (FEF05_07955) - 1580177..1580798 (+) 622 Protein_1547 IS1595 family transposase -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 69475.56 Da        Isoelectric Point: 8.7716

>NTDB_id=320700 FEF05_RS07920 WP_149351022.1 1574619..1576457(-) (uvrC) [Glaesserella parasuis strain HPS-1]
MSKFNSKQFLADTPHNPGVYRMYDDKGTIIYVGKAKDLKKRLSSYFRSNLASRKTEALVSQIAHIDTTITHSETEALLLE
HNYIKENQPKYNVLLRDDKSYPYILLTQHQHPRLASFRGSKKIAGEYFGPYPNAGAVRETLNLLQKLFPIRQCEDSYYKN
RSRPCLQYQIGRCLAPCVEGVYSQREYDQQVEYVRLFLQGKDQQVIEHLIGKMEKAAEDLDFEAAARFRDQIQQVRAVTE
KQFVSNERLDDLDIISIAYQHGIACVHILFVRQGKVLGSRSYFPKVPNHTELAELSDTFIGQFYLQMNQHRTIPHQIIID
HPVSEVEALEKVLSEQTGHKVSITDKVRGEKSRYLALAKTNAMAALTLQLKQDARIQTRYEALQAVLSLPKIARMECFDI
SHTMGEQTVASCVVFDENGPLKSDYRRFNIEGITGGDDYAAMEQALIKRYDKPLPPEKIPDIIFIDGGKGQLNRALETFA
NLKVEWDKSKPLLIGVAKGVERKAGLETLLISKWDKEIHLPPDSPALHLIQHIRDESHNHAISGHRKKRQKAFTESGLEA
IAGVGAKRRHLLLKYLGGMQGVKSATLDEIKSVPGISVSLAEIIFDTLNYSE

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=320700 FEF05_RS07920 WP_149351022.1 1574619..1576457(-) (uvrC) [Glaesserella parasuis strain HPS-1]
ATGTCAAAATTCAATTCCAAACAATTTCTTGCCGATACGCCACATAACCCTGGTGTTTATCGTATGTATGATGATAAAGG
CACGATCATCTATGTCGGTAAGGCAAAAGATTTAAAAAAGCGTCTATCGAGCTATTTTCGTAGCAATCTTGCCAGCCGAA
AAACCGAAGCCTTGGTCTCGCAAATTGCTCATATTGATACCACCATTACCCATTCGGAAACCGAAGCCTTACTGTTGGAA
CACAATTACATTAAGGAAAATCAACCGAAATACAATGTGTTGCTCCGTGACGATAAATCTTACCCTTATATTTTGCTCAC
CCAACACCAACACCCACGTTTAGCCAGTTTTCGGGGGAGCAAAAAAATTGCTGGGGAATATTTTGGACCTTACCCAAATG
CAGGGGCGGTGCGAGAAACCTTAAATCTGCTCCAAAAACTGTTTCCGATCCGCCAGTGTGAAGACAGCTACTACAAAAAC
CGTTCTCGTCCTTGTTTGCAGTATCAAATCGGGCGTTGCCTTGCCCCTTGCGTTGAAGGCGTTTATTCCCAACGAGAATA
CGATCAACAGGTGGAGTATGTTCGCTTATTCTTACAAGGTAAAGATCAGCAAGTGATCGAACATTTGATCGGTAAAATGG
AAAAAGCTGCGGAAGATCTGGATTTTGAAGCTGCTGCCCGTTTTCGAGATCAAATTCAGCAGGTGCGAGCGGTCACTGAA
AAGCAATTTGTATCGAATGAACGTCTAGATGATCTCGATATTATCTCGATTGCCTATCAACACGGTATTGCTTGCGTGCA
TATTCTGTTTGTACGACAAGGGAAAGTGTTGGGTAGCCGAAGTTATTTCCCAAAAGTACCGAACCATACGGAACTTGCTG
AATTGAGCGACACTTTTATCGGGCAGTTTTATTTGCAGATGAACCAACATCGCACCATTCCGCACCAAATCATTATCGAT
CACCCCGTGAGCGAAGTGGAAGCCTTAGAAAAGGTATTGTCGGAACAAACAGGACATAAAGTGAGTATTACCGATAAGGT
GCGTGGCGAGAAAAGCCGTTATCTTGCGCTTGCCAAAACGAATGCAATGGCAGCATTGACCTTACAACTCAAGCAAGACG
CTCGTATCCAAACCCGTTATGAAGCCTTGCAAGCGGTGCTTTCTTTGCCAAAAATTGCAAGAATGGAATGTTTCGACATC
AGTCATACGATGGGCGAACAAACAGTCGCTTCTTGTGTTGTATTTGATGAAAACGGCCCGTTAAAATCTGACTATCGCCG
TTTTAACATTGAAGGTATTACAGGGGGCGATGATTATGCTGCGATGGAACAAGCTCTGATCAAGCGTTACGATAAACCGC
TTCCGCCTGAAAAAATCCCTGATATTATCTTCATTGACGGCGGAAAAGGGCAGTTAAACCGAGCCTTAGAAACTTTTGCC
AATCTCAAGGTGGAATGGGATAAATCCAAACCATTACTTATCGGCGTAGCAAAAGGCGTAGAACGCAAGGCAGGGTTAGA
AACCTTGCTGATCAGCAAATGGGACAAGGAAATCCACCTACCACCCGACAGCCCTGCGTTACATTTAATTCAGCATATCC
GTGATGAATCCCATAACCACGCCATTAGCGGACACCGTAAAAAACGGCAAAAAGCCTTTACCGAAAGTGGTTTAGAGGCA
ATCGCTGGCGTTGGGGCTAAACGCCGCCATTTGTTGCTAAAATATCTCGGTGGTATGCAAGGCGTCAAATCAGCAACACT
TGATGAAATTAAATCGGTTCCTGGAATTTCAGTATCTTTGGCTGAGATTATTTTCGATACCCTAAATTATAGTGAATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(204-236)

GIY-YIG catalytic domain (GIY-YIG)

(17-92)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(385-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.294

99.02

0.369
  uvrC Streptococcus pneumoniae R6

36.964

99.02

0.366
  uvrC Streptococcus pneumoniae D39

36.964

99.02

0.366