Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FEF05_RS04350 Genome accession   NZ_CP040243
Coordinates   852650..853159 (-) Length   169 a.a.
NCBI ID   WP_112063019.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 847650..858159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS04330 (FEF05_04335) hscA 848110..849966 (+) 1857 WP_149350797.1 Fe-S protein assembly chaperone HscA -
  FEF05_RS04335 (FEF05_04340) fdx 850061..850402 (+) 342 WP_010785894.1 ISC system 2Fe-2S type ferredoxin -
  FEF05_RS04340 (FEF05_04345) iscX 850402..850596 (+) 195 WP_010785893.1 Fe-S cluster assembly protein IscX -
  FEF05_RS04345 (FEF05_04350) - 850681..852533 (-) 1853 Protein_844 ABC transporter ATP-binding protein -
  FEF05_RS04350 (FEF05_04355) luxS 852650..853159 (-) 510 WP_112063019.1 S-ribosylhomocysteine lyase Regulator
  FEF05_RS04355 (FEF05_04360) typA 853423..855270 (+) 1848 WP_010785890.1 translational GTPase TypA -
  FEF05_RS04360 (FEF05_04365) - 855319..855582 (+) 264 WP_005711404.1 GrxA family glutaredoxin -
  FEF05_RS04365 (FEF05_04370) - 855974..856318 (-) 345 WP_005711402.1 DUF5339 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18988.87 Da        Isoelectric Point: 6.4914

>NTDB_id=320690 FEF05_RS04350 WP_112063019.1 852650..853159(-) (luxS) [Glaesserella parasuis strain HPS-1]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFVRPNIEILSPRGIHTMEHLFAGFMRDHLNSDTVEIIDISP
MGCRTGFYMSLIGSPSAEEVAKAWEASMRDALEKVPDKTKIPELNEFQCGSYKEHSLADAHEIARNVLKQPIGINRNKDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=320690 FEF05_RS04350 WP_112063019.1 852650..853159(-) (luxS) [Glaesserella parasuis strain HPS-1]
ATGCCTTTACTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCTCCTGCGGTGCGTGTTGCAAAAACAATGACAAC
CCCGAAGGGAGATACGATTACTGTGTTTGATTTGCGTTTTGTCCGTCCAAACATTGAGATTTTATCACCTCGTGGTATTC
ATACGATGGAACATTTATTTGCTGGTTTTATGCGTGATCATCTCAATAGCGATACCGTTGAAATTATTGATATTTCCCCG
ATGGGTTGCCGTACGGGATTTTATATGTCGTTAATTGGTTCACCTTCAGCTGAAGAAGTGGCAAAAGCTTGGGAAGCCTC
TATGCGTGATGCGTTAGAGAAAGTGCCTGATAAAACTAAAATTCCTGAGTTAAATGAGTTTCAATGTGGTTCATATAAGG
AACATTCTCTTGCTGATGCACACGAAATTGCGCGTAATGTGTTAAAACAACCGATTGGTATTAACCGTAACAAAGATTTA
GCATTAGATGAGAAATTGCTAAATCCATAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

70.238

99.408

0.698

Multiple sequence alignment