Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   D9829_RS14525 Genome accession   NZ_CP033044
Coordinates   3004913..3007279 (+) Length   788 a.a.
NCBI ID   WP_121611578.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2999913..3012279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS14510 spoVB 3000319..3001893 (-) 1575 WP_121611575.1 stage V sporulation protein B -
  D9829_RS14515 - 3002016..3002312 (+) 297 WP_121611576.1 post-transcriptional regulator -
  D9829_RS14520 secDF 3002474..3004738 (+) 2265 WP_121611577.1 protein translocase subunit SecDF -
  D9829_RS14525 recJ 3004913..3007279 (+) 2367 WP_121611578.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  D9829_RS14530 - 3007270..3007782 (+) 513 WP_121611579.1 adenine phosphoribosyltransferase -
  D9829_RS14535 - 3008043..3010238 (+) 2196 WP_121611580.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  D9829_RS14540 dtd 3010287..3010727 (+) 441 WP_121611581.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 87915.49 Da        Isoelectric Point: 5.1211

>NTDB_id=320689 D9829_RS14525 WP_121611578.1 3004913..3007279(+) (recJ) [Mesobacillus foraminis strain Bac44]
MLKSRTKWNVKQTDSMKAKELAEVLNIAHLTASLLVNRGIETVQDARDFLFNDNMEFHDPFLLKDMDKAVERINKAVQEQ
QPILIFGDYDADGVSSTTVMMRVLLDLGANVDYYIPNRFTEGYGPNEAAFRKAAEKGTALIITVDTGISALHEADVAREL
GMDLIITDHHEPGPVLPDAYAIVHPKLEDSKYPFRDLAGVGVAFKLAHALYGAAPEELLEIAAIGTIADLVSLTNENRLI
AKKGIEQLRKTQNLGLRALFKLTKTESASINEETVGFMIGPRINAAGRLGSADPAVRLLLSEDPGEAAMLASEIDGLNKE
RQALVASIAEEAINEVETNFPVEDNHVLVIGKEDWNPGVIGIVASRLVEKYYRPTIVLSFDKEKGVAKGSARSIAGFDLF
KNLSASRDILPHFGGHPMAAGMTLKLEDVVELRKRLNKLASEQLTESDLTPVTQVDLEADIKDITLDFLKEMGQLSPYGV
DNPKPRVMIKDAGISSMRRIGGNNAHLKITLGNDGASLDGIGFGLGDLHEHISPISSLSVIGELSINEWNNIRKPQIFLQ
DVAVNSWQLFDIRGLRRTEKLKEMVPEDGTKWILFDEGKEERFLPFAQKSLVKIRSLEEAINTEIDSTNIVLLDLPASGG
MLEKLISGKKPARIYVHFHKEDSDFFSTMPTREHFKWFYAFLAKKAPFDLKRHGEELAKYRGWSKETIEFMSQVFFDLDF
VKINNGIISLEKSVPKRDLSESKTYQKKQATFTLENDLLYSSFEQLKSWFDQVIQGSVQNEEAITEWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=320689 D9829_RS14525 WP_121611578.1 3004913..3007279(+) (recJ) [Mesobacillus foraminis strain Bac44]
ATGTTAAAATCCAGAACTAAATGGAACGTTAAACAAACTGACTCAATGAAAGCAAAAGAGTTAGCCGAAGTACTAAATAT
AGCCCATTTAACAGCATCCCTCCTCGTGAATCGAGGTATTGAAACTGTTCAGGATGCACGGGATTTTCTATTTAATGACA
ACATGGAGTTTCATGATCCGTTCTTGTTAAAGGATATGGATAAAGCGGTAGAACGCATCAATAAAGCTGTACAGGAGCAG
CAACCAATCCTGATATTTGGTGATTATGATGCAGATGGAGTCAGTTCCACAACAGTGATGATGAGAGTATTGCTCGATTT
AGGAGCCAATGTGGACTACTATATTCCGAACCGTTTCACAGAAGGCTATGGTCCGAATGAAGCTGCCTTTCGAAAAGCCG
CAGAAAAAGGGACAGCGCTGATCATTACGGTTGATACTGGGATATCTGCTCTCCATGAGGCCGATGTGGCCAGGGAACTT
GGAATGGACCTGATTATTACCGACCACCATGAACCGGGGCCAGTCCTCCCGGATGCTTACGCCATCGTCCACCCTAAACT
TGAAGACAGCAAGTATCCATTCAGGGACCTTGCAGGGGTAGGGGTGGCATTCAAACTGGCACACGCTCTCTATGGGGCCG
CACCTGAAGAGTTATTGGAAATTGCAGCAATTGGTACCATTGCGGATTTGGTCTCTCTGACCAATGAGAACCGTTTAATT
GCAAAAAAAGGCATAGAACAGCTGAGAAAGACCCAAAACTTAGGGCTTCGAGCCTTGTTTAAGCTGACCAAAACGGAATC
AGCGTCCATCAATGAGGAAACAGTCGGGTTTATGATTGGGCCTCGTATTAATGCCGCTGGCCGCCTTGGCAGCGCGGACC
CTGCTGTTCGACTTTTGTTATCGGAGGATCCCGGAGAGGCAGCAATGCTGGCTTCGGAAATTGATGGATTGAATAAGGAG
CGCCAGGCCCTTGTTGCTTCAATTGCAGAGGAAGCTATCAATGAGGTTGAAACGAACTTCCCTGTGGAGGACAACCATGT
CCTCGTAATTGGAAAGGAAGACTGGAACCCAGGTGTAATAGGGATTGTGGCTTCCCGCCTTGTAGAAAAATATTACAGGC
CGACAATCGTACTGAGCTTTGACAAAGAGAAGGGCGTTGCAAAAGGATCTGCAAGAAGTATTGCAGGCTTTGATTTATTC
AAGAATCTTTCTGCTTCCCGTGACATTCTCCCTCATTTCGGGGGCCATCCCATGGCAGCCGGGATGACCCTGAAGCTGGA
GGATGTCGTTGAGCTAAGAAAGCGGCTGAATAAACTTGCTTCAGAGCAATTGACTGAATCGGACCTTACCCCTGTGACAC
AGGTTGACCTTGAGGCAGACATAAAGGACATTACCCTTGATTTTCTAAAGGAGATGGGGCAGCTTTCGCCTTATGGTGTG
GATAACCCTAAACCAAGAGTGATGATTAAAGATGCCGGTATATCCTCGATGAGAAGAATCGGAGGCAATAATGCGCATTT
AAAGATTACACTGGGAAATGACGGGGCGTCACTGGATGGGATTGGATTTGGTCTAGGTGACCTTCATGAACATATCTCGC
CTATTTCTTCCTTGTCAGTCATTGGGGAGCTGTCGATTAATGAATGGAACAACATCAGGAAGCCTCAAATTTTCCTGCAG
GATGTAGCCGTTAATTCCTGGCAGCTCTTTGATATCAGAGGCCTGAGGAGAACAGAAAAGCTAAAGGAAATGGTTCCGGA
AGATGGCACAAAGTGGATTTTGTTTGACGAGGGAAAAGAGGAAAGATTTTTGCCTTTTGCCCAAAAAAGCCTTGTGAAGA
TCCGTTCATTGGAGGAAGCAATCAATACAGAAATCGATTCTACGAATATTGTCCTTCTTGATTTGCCAGCTTCGGGAGGA
ATGCTCGAAAAGCTTATTTCCGGAAAGAAACCGGCTCGGATTTATGTGCATTTTCATAAAGAAGACAGTGACTTCTTTAG
CACAATGCCGACAAGAGAGCATTTTAAGTGGTTCTATGCTTTTCTGGCGAAAAAAGCGCCGTTTGACCTTAAAAGGCATG
GTGAGGAACTGGCAAAATACAGAGGCTGGTCAAAAGAAACCATAGAATTTATGTCACAGGTGTTTTTTGACCTCGATTTT
GTTAAAATAAACAATGGAATTATTTCCTTAGAGAAGAGCGTCCCAAAACGGGATTTATCGGAATCTAAAACCTATCAGAA
AAAACAAGCTACATTTACTCTTGAAAATGATTTGCTTTATTCATCGTTTGAGCAGTTGAAGAGCTGGTTCGACCAAGTCA
TTCAAGGGTCGGTGCAAAATGAGGAGGCAATTACAGAATGGATTTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(455-561)

DHHA1 domain (DHHA1)

(316-439)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.13

99.873

0.541

Multiple sequence alignment