Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FEF05_RS04165 Genome accession   NZ_CP040243
Coordinates   811381..812931 (+) Length   516 a.a.
NCBI ID   WP_149350782.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806381..817931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS04140 (FEF05_04145) - 807633..808529 (+) 897 WP_075605808.1 ABC transporter ATP-binding protein -
  FEF05_RS04145 (FEF05_04150) - 808551..809306 (+) 756 WP_012621503.1 ABC transporter permease -
  FEF05_RS04150 (FEF05_04155) - 809434..810531 (+) 1098 WP_012621948.1 ISAs1 family transposase -
  FEF05_RS04155 (FEF05_04160) - 810637..810891 (+) 255 WP_010785924.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  FEF05_RS04160 (FEF05_04165) - 810888..811172 (+) 285 WP_012621505.1 type II toxin-antitoxin system RelE family toxin -
  FEF05_RS04165 (FEF05_04170) sbcB 811381..812931 (+) 1551 WP_149350782.1 exodeoxyribonuclease I Machinery gene
  FEF05_RS04170 (FEF05_04175) - 813014..813973 (+) 960 WP_149350783.1 S-adenosyl-l-methionine hydroxide adenosyltransferase family protein -
  FEF05_RS04175 (FEF05_04180) - 814121..814942 (+) 822 WP_149350784.1 PHP domain-containing protein -
  FEF05_RS04180 (FEF05_04185) ilvN 815048..815539 (-) 492 WP_016528224.1 acetolactate synthase small subunit -
  FEF05_RS04185 (FEF05_04190) - 815532..817253 (-) 1722 WP_112063031.1 acetolactate synthase 3 large subunit -

Sequence

Protein


Download         Length: 516 a.a.        Molecular weight: 58948.10 Da        Isoelectric Point: 5.5315

>NTDB_id=320689 FEF05_RS04165 WP_149350782.1 811381..812931(+) (sbcB) [Glaesserella parasuis strain HPS-1]
MVQTTFFIYDYESFGVDPATDRPAQFAGIRTDSDFNIIGEPVMFYCQQTEDYLPSPEAVMVTGITPQLCNQQGLPEPEFA
ARIHVEFSQPNTCVMGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDVVRACYALRPEGIEWAYDDEGMPSFK
LENLTKANGIAHDNAHDAMADVYATIAMAKLIKQKQPKLFDFFLQNRGKKALEEMIDVGEMTPLVHVSGMLGNYRGNTAW
VVPLAWHPTNRNAVIVCDLSGNINDLLNEPSEILRERLYTKKAELEAQGLYTVPLKLVHINKCPILAPAKTLLPENATRL
GIDRQSCLENLKRLKSQKNLVREKVLDIFSEERNYPTSNNIETTLYDGFFEPADKNNMAILRSLKPEELAHHGLKFSDPR
IEPLLFHYRARHYAETLTRAEQVRWQKYCYQQLETKAEAFEQALDLLSAQYHDNPDKIKLLTELTAYAAQLMQPKATKSV
NSPASELLVSELNQLADQGLSKADKLKAIGALLNKK

Nucleotide


Download         Length: 1551 bp        

>NTDB_id=320689 FEF05_RS04165 WP_149350782.1 811381..812931(+) (sbcB) [Glaesserella parasuis strain HPS-1]
ATGGTTCAAACCACCTTTTTTATTTACGATTACGAAAGTTTTGGTGTCGATCCTGCTACAGATCGTCCTGCACAATTTGC
AGGGATCCGCACCGATAGCGATTTCAACATTATCGGTGAACCCGTGATGTTCTACTGCCAACAAACAGAAGATTATTTGC
CTTCACCAGAAGCTGTGATGGTAACAGGGATTACACCACAGCTTTGTAATCAACAAGGGCTACCTGAACCTGAATTTGCC
GCGCGTATTCACGTCGAATTTAGCCAACCTAACACCTGCGTAATGGGATATAACAACATTCGCTATGATGATGAAATGAC
CCGTTATACCTTTTTCCGCAATTTTTTCGATCCTTATGAATATAGCTGGAAAAACGGCAATTCTCGTTGGGATCTTCTTG
ATGTTGTGCGTGCCTGTTATGCTTTACGTCCAGAAGGGATAGAATGGGCGTATGATGATGAAGGTATGCCGAGCTTTAAA
TTAGAAAATTTGACCAAAGCAAATGGTATTGCTCACGACAACGCTCACGATGCAATGGCTGATGTGTATGCTACTATTGC
AATGGCAAAGTTAATCAAACAAAAACAACCTAAATTATTCGACTTTTTCCTGCAAAATCGAGGTAAAAAAGCCCTAGAAG
AGATGATTGATGTCGGTGAAATGACACCGCTTGTTCACGTTTCTGGAATGTTAGGCAACTATCGAGGTAACACCGCTTGG
GTTGTGCCATTGGCTTGGCACCCGACTAATCGAAACGCAGTGATTGTATGTGATCTATCGGGGAATATAAACGACCTATT
GAATGAGCCAAGCGAAATATTGCGTGAACGCCTTTATACCAAAAAAGCAGAATTAGAAGCTCAAGGGCTTTATACTGTTC
CACTAAAACTTGTGCATATTAATAAATGCCCGATTTTAGCTCCAGCCAAAACGTTACTGCCTGAAAATGCAACACGTTTA
GGCATTGATCGTCAATCCTGTTTAGAAAATTTAAAACGGCTAAAATCACAAAAAAACCTTGTGCGAGAAAAGGTTCTCGA
TATTTTTTCTGAAGAAAGAAACTATCCAACGTCAAATAATATAGAAACCACGTTATACGATGGCTTTTTTGAACCTGCAG
ATAAAAACAATATGGCAATCTTACGAAGCCTAAAACCTGAAGAGCTTGCACATCACGGTTTGAAATTTAGCGATCCTAGA
ATTGAGCCTCTGCTTTTCCATTATCGAGCAAGACACTACGCAGAAACCTTAACACGGGCAGAACAAGTACGTTGGCAAAA
GTATTGCTATCAACAACTTGAAACAAAAGCAGAGGCCTTTGAACAAGCACTTGATCTGTTATCGGCTCAATATCACGATA
ATCCTGACAAGATAAAATTATTGACGGAACTCACCGCTTACGCAGCACAATTAATGCAGCCTAAAGCCACCAAATCCGTC
AATTCACCAGCTTCAGAGCTATTAGTATCGGAATTAAATCAACTTGCTGATCAAGGGCTGAGTAAAGCGGATAAATTAAA
AGCGATTGGGGCTTTGCTTAATAAAAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(8-186)

Exonuclease C-terminal (ExoI_SH3)

(207-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

56.29

90.891

0.512

Multiple sequence alignment