Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB   Type   Machinery gene
Locus tag   FEF05_RS03945 Genome accession   NZ_CP040243
Coordinates   765271..765792 (+) Length   173 a.a.
NCBI ID   WP_005712507.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 760271..770792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS03930 (FEF05_03935) aroK 761158..761679 (-) 522 WP_005712514.1 shikimate kinase AroK -
  FEF05_RS03935 (FEF05_03940) - 761909..764464 (-) 2556 WP_035490200.1 penicillin-binding protein 1A -
  FEF05_RS03940 (FEF05_03945) comA 764618..765295 (+) 678 WP_005712510.1 hypothetical protein Machinery gene
  FEF05_RS03945 (FEF05_03950) comB 765271..765792 (+) 522 WP_005712507.1 hypothetical protein Machinery gene
  FEF05_RS03950 (FEF05_03955) comC 765789..766319 (+) 531 WP_149350765.1 ATPase Machinery gene
  FEF05_RS03955 (FEF05_03960) comD 766319..766705 (+) 387 WP_149350766.1 pilus assembly protein PilP Machinery gene
  FEF05_RS03960 (FEF05_03965) comE 766715..767977 (+) 1263 WP_026917118.1 type IV pilus secretin PilQ Machinery gene
  FEF05_RS03965 (FEF05_03970) nusB 768056..768469 (+) 414 WP_005712500.1 transcription antitermination factor NusB -
  FEF05_RS03970 (FEF05_03975) thiL 768478..769446 (+) 969 WP_021110497.1 thiamine-phosphate kinase -
  FEF05_RS03975 (FEF05_03980) - 769449..769919 (+) 471 WP_005712497.1 phosphatidylglycerophosphatase A -
  FEF05_RS03980 (FEF05_03985) - 769921..770550 (+) 630 WP_010785950.1 LysE family transporter -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20324.01 Da        Isoelectric Point: 7.3557

>NTDB_id=320683 FEF05_RS03945 WP_005712507.1 765271..765792(+) (comB) [Glaesserella parasuis strain HPS-1]
MEWQGINLNGYRQQQWLKQSQKNLKHLTACIVISTLLALLISWQNQQQQHQFHTLAQQRQQSQEQQTALSQQIEQLTLQS
QNKSTQSLENRQITAFLNYLLGIQLSGIIEIAQLYQAENTVFKLKGKVSSPTQFSQLEQQLKAMNYIYQIEQFETREKSE
IEFSLHIDLKEKE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=320683 FEF05_RS03945 WP_005712507.1 765271..765792(+) (comB) [Glaesserella parasuis strain HPS-1]
ATGGAATGGCAAGGTATCAATCTAAACGGCTATCGCCAACAGCAATGGTTGAAACAGTCGCAAAAAAACCTCAAGCATCT
CACCGCTTGCATTGTGATTAGCACACTACTGGCGTTACTTATCAGTTGGCAAAATCAACAGCAACAACATCAATTTCACA
CTTTGGCTCAACAGCGACAACAAAGCCAAGAGCAACAAACCGCATTAAGCCAGCAGATTGAACAACTGACTTTGCAATCA
CAAAATAAAAGCACACAAAGCCTAGAGAACAGACAGATTACCGCATTTTTGAATTATCTGTTAGGCATTCAATTATCAGG
GATTATTGAGATAGCCCAACTATACCAAGCAGAAAATACCGTCTTTAAACTCAAAGGCAAGGTGTCTAGCCCTACTCAAT
TTAGCCAGCTTGAACAACAATTAAAAGCAATGAATTACATTTATCAAATAGAACAATTTGAAACGCGTGAAAAAAGCGAG
ATTGAATTTAGCCTACATATTGATTTAAAGGAAAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB Glaesserella parasuis strain SC1401

97.11

100

0.971