Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9829_RS12545 Genome accession   NZ_CP033044
Coordinates   2577080..2578030 (+) Length   316 a.a.
NCBI ID   WP_121611243.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2572080..2583030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS12530 - 2572220..2573692 (+) 1473 WP_371862543.1 glycoside hydrolase family 1 protein -
  D9829_RS12535 - 2574392..2574610 (-) 219 WP_251032507.1 methionine aminopeptidase -
  D9829_RS12540 - 2574897..2576846 (+) 1950 WP_121611242.1 LTA synthase family protein -
  D9829_RS12545 ceuB 2577080..2578030 (+) 951 WP_121611243.1 ABC transporter permease Machinery gene
  D9829_RS12550 - 2578023..2578973 (+) 951 WP_121611244.1 iron chelate uptake ABC transporter family permease subunit -
  D9829_RS12555 - 2578967..2579725 (+) 759 WP_121611245.1 ABC transporter ATP-binding protein -
  D9829_RS12560 katA 2579828..2581276 (-) 1449 WP_121611246.1 catalase KatA -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.17 Da        Isoelectric Point: 9.7132

>NTDB_id=320682 D9829_RS12545 WP_121611243.1 2577080..2578030(+) (ceuB) [Mesobacillus foraminis strain Bac44]
MKLIYLVISFIVLSITSLFIGVQNISPLELFNLSEEQAHILLVSRFPRLVSIILAGVSMSICGLIMQQLTRNKFVSPTTA
GTMDSARFGILVSLMLFSTAGPIVKMLVAFVFALLGTFIFMKLLDKVKFKDAIFIPLVGMMFGNIVGSITTFFAYKNDLI
QNMSSWLQGNFSMMIQGRYELLYISIPLVLIAYLYANKFTIAGMGEEFAVNLGLNHKQIVNIGLTIVALITTVVVLTVGM
IPFLGLIVPNIVTMYRGDHLQKSLSHTALLGAVFVLACDILGRIVIYPYEIPIGLTVGVIGSGIFLYLIMRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=320682 D9829_RS12545 WP_121611243.1 2577080..2578030(+) (ceuB) [Mesobacillus foraminis strain Bac44]
ATGAAACTCATATACTTGGTAATAAGCTTCATTGTTTTATCCATAACTTCATTATTTATCGGGGTCCAGAATATCTCCCC
ACTAGAATTGTTTAATTTATCTGAAGAACAGGCTCATATCCTGTTGGTCAGCAGATTCCCTCGGCTGGTCTCCATTATAC
TGGCAGGGGTCAGCATGAGTATCTGCGGCTTAATCATGCAGCAGCTGACAAGGAATAAATTTGTATCGCCTACAACAGCT
GGTACAATGGATTCAGCAAGATTTGGGATCCTGGTTTCCCTAATGCTTTTCTCGACAGCCGGGCCGATTGTGAAGATGCT
TGTGGCATTCGTCTTTGCCCTGCTGGGTACCTTCATTTTTATGAAACTGCTGGACAAGGTGAAATTTAAGGATGCCATAT
TTATTCCTCTCGTCGGAATGATGTTTGGTAATATAGTTGGCTCAATCACAACGTTTTTTGCCTACAAAAATGATCTGATT
CAAAATATGTCCTCCTGGCTGCAGGGAAATTTCTCAATGATGATTCAGGGGCGCTATGAACTCCTGTACATAAGTATCCC
GCTGGTCCTTATTGCTTATCTTTATGCCAATAAATTCACCATTGCTGGAATGGGAGAAGAGTTTGCGGTCAACCTGGGTT
TAAACCACAAACAGATAGTGAATATTGGTTTGACCATTGTCGCATTAATCACAACTGTCGTGGTTTTAACCGTTGGAATG
ATTCCATTCCTTGGCCTGATTGTGCCAAATATTGTTACAATGTACAGGGGAGATCATTTACAGAAAAGCCTTTCTCATAC
AGCGCTGCTTGGGGCCGTCTTTGTCCTGGCCTGTGACATTTTAGGCAGAATTGTGATCTATCCATATGAGATCCCAATCG
GTCTGACTGTCGGGGTAATTGGAAGCGGGATTTTTCTTTACTTGATCATGAGGAGAAAGGCATATGAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

56

94.937

0.532

Multiple sequence alignment