Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   FEF05_RS01185 Genome accession   NZ_CP040243
Coordinates   222585..223835 (+) Length   416 a.a.
NCBI ID   WP_149350580.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 217585..228835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS01155 (FEF05_01160) - 217912..218175 (-) 264 Protein_230 transposase -
  FEF05_RS01160 (FEF05_01165) rluB 218488..219507 (-) 1020 WP_015940023.1 23S rRNA pseudouridine(2605) synthase RluB -
  FEF05_RS01165 (FEF05_01170) - 219676..220296 (-) 621 WP_149350579.1 L-threonylcarbamoyladenylate synthase -
  FEF05_RS12030 - 220832..221077 (+) 246 WP_021110374.1 anion permease -
  FEF05_RS12035 - 221055..221429 (+) 375 WP_075592870.1 SLC13 family permease -
  FEF05_RS01175 (FEF05_01180) - 221507..221896 (-) 390 WP_005711765.1 SufE family protein -
  FEF05_RS01180 (FEF05_01185) clpP 221997..222578 (+) 582 WP_010787003.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  FEF05_RS01185 (FEF05_01190) clpX 222585..223835 (+) 1251 WP_149350580.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  FEF05_RS01190 (FEF05_01195) dapE 223909..225042 (-) 1134 WP_005711772.1 succinyl-diaminopimelate desuccinylase -
  FEF05_RS01195 (FEF05_01200) - 225126..225794 (-) 669 WP_035491631.1 prepilin peptidase -
  FEF05_RS01200 (FEF05_01205) pilC 225791..226987 (-) 1197 WP_149350581.1 type II secretion system F family protein Machinery gene
  FEF05_RS01205 (FEF05_01210) pilB 226980..228365 (-) 1386 WP_149350582.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45777.46 Da        Isoelectric Point: 5.4066

>NTDB_id=320670 FEF05_RS01185 WP_149350580.1 222585..223835(+) (clpX) [Glaesserella parasuis strain HPS-1]
MANFEKEPHCSFCGKRRNEVDALIEGTEGHICNECIEESYALINGTDEPLIDENEAESQDVLGNVPTPHEIHAHLDDYVI
GQEHAKKVLSVAVYNHHKRLRNALSDNKESEGVELGKSNILLIGPTGSGKTLLAETLARRLNVPFAVADATTLTQAGYVG
EDVENVIQKLLMKCDFDKDQAERGIIFIDEIDKITRKSENPSLTRDVSGEGVQQALLKLIEGTIANINPQGGRKHPKQET
IPVDTSKILFICGGAFAGLDKIVEARTNTQGGIGFKAELKKDKARQALTELFKQVEPEDLVKFGLIPELIGRLPVITPLE
ELDEKALINILTEPKNAIIKQYQALFKMEGVELKFTKDALVAIAQKAISRKTGARGLRSIVENLLLDTMYDLPSLKASKV
TVSKNCVEKGEKPKVE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=320670 FEF05_RS01185 WP_149350580.1 222585..223835(+) (clpX) [Glaesserella parasuis strain HPS-1]
ATGGCAAATTTTGAGAAAGAACCACATTGTAGTTTTTGCGGGAAGCGTCGTAATGAAGTCGATGCATTAATTGAAGGTAC
AGAAGGGCATATTTGTAACGAATGTATTGAAGAGTCTTATGCGTTAATTAATGGAACAGACGAACCATTGATTGATGAAA
ATGAAGCTGAGAGCCAAGATGTGTTAGGCAATGTGCCTACCCCACACGAAATTCACGCACATTTAGATGATTATGTGATC
GGTCAAGAACACGCTAAAAAGGTATTGTCCGTTGCGGTCTATAACCACCACAAACGCTTACGCAATGCACTGTCTGACAA
TAAAGAGAGTGAGGGCGTTGAGTTAGGTAAAAGTAACATTTTGCTTATCGGTCCAACAGGAAGTGGTAAAACATTGTTAG
CAGAAACCTTGGCACGCCGTTTAAATGTGCCTTTTGCTGTGGCTGATGCAACAACACTGACGCAAGCAGGTTATGTGGGT
GAAGATGTTGAAAATGTGATCCAAAAATTGCTGATGAAGTGTGATTTTGATAAAGATCAGGCTGAACGTGGCATTATTTT
TATTGATGAAATCGACAAAATTACCCGTAAATCAGAAAATCCATCATTGACCCGTGATGTATCAGGGGAAGGGGTTCAGC
AAGCGTTGCTGAAATTGATTGAAGGCACTATTGCGAATATCAATCCACAGGGTGGACGCAAACACCCGAAACAAGAAACA
ATTCCAGTCGATACGTCTAAAATTCTCTTTATCTGCGGTGGTGCATTTGCTGGGCTAGATAAAATTGTCGAGGCTCGAAC
AAATACACAAGGCGGAATTGGCTTTAAAGCGGAATTGAAGAAAGATAAAGCTCGTCAGGCACTCACTGAATTATTCAAAC
AAGTTGAGCCTGAAGATTTGGTGAAATTTGGTTTAATTCCAGAGCTAATCGGGCGTTTGCCTGTTATCACACCGCTTGAA
GAACTTGATGAAAAAGCACTTATTAACATTTTGACAGAGCCGAAAAATGCGATTATCAAGCAGTATCAAGCTTTGTTCAA
AATGGAAGGTGTGGAGTTAAAATTCACCAAAGATGCTTTAGTGGCGATTGCTCAAAAAGCGATTTCTCGCAAAACAGGGG
CAAGGGGGCTACGTTCTATCGTGGAAAACTTGTTACTCGACACGATGTATGATTTACCATCATTGAAAGCAAGTAAAGTG
ACAGTGAGTAAAAACTGTGTTGAGAAAGGTGAAAAGCCGAAGGTGGAGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(322-396)

AAA domain (Cdc48 subfamily) (AAA_2)

(117-316)

ClpX C4-type zinc finger (zf-C4_ClpX)

(9-44)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

55.99

98.317

0.55
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.768

98.317

0.538

Multiple sequence alignment