Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FD987_RS08010 Genome accession   NZ_CP040239
Coordinates   1578760..1580265 (+) Length   501 a.a.
NCBI ID   WP_023362239.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573760..1585265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS07985 (FD987_07985) fliI 1574221..1575606 (-) 1386 WP_002831479.1 flagellar protein export ATPase FliI -
  FD987_RS07990 (FD987_07990) folE 1575606..1576178 (-) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  FD987_RS07995 (FD987_07995) tig 1576299..1577624 (+) 1326 WP_023362237.1 trigger factor -
  FD987_RS08000 (FD987_08000) clpP 1577624..1578208 (+) 585 WP_002831473.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  FD987_RS08005 (FD987_08005) def 1578236..1578763 (+) 528 WP_002778535.1 peptide deformylase -
  FD987_RS08010 (FD987_08010) comM 1578760..1580265 (+) 1506 WP_023362239.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FD987_RS08015 (FD987_08015) - 1580267..1580965 (+) 699 WP_002778537.1 NYN domain-containing protein -
  FD987_RS08020 (FD987_08020) - 1580949..1582319 (+) 1371 WP_002801372.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  FD987_RS08025 (FD987_08025) purN 1582310..1582885 (+) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  FD987_RS08030 (FD987_08030) - 1583023..1583259 (-) 237 WP_002778540.1 hypothetical protein -
  FD987_RS08035 (FD987_08035) - 1583425..1584141 (-) 717 WP_023362241.1 ankyrin repeat domain-containing protein -
  FD987_RS08040 (FD987_08040) - 1584282..1585022 (+) 741 WP_002778542.1 TerC family protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56622.66 Da        Isoelectric Point: 8.7459

>NTDB_id=320664 FD987_RS08010 WP_023362239.1 1578760..1580265(+) (comM) [Campylobacter coli strain S9]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVLPKNIALKASMIPNLEIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=320664 FD987_RS08010 WP_023362239.1 1578760..1580265(+) (comM) [Campylobacter coli strain S9]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTACTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAGAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATCATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.293

99.601

0.461
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.273

99.601

0.361