Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   D9829_RS02745 Genome accession   NZ_CP033044
Coordinates   552479..553429 (-) Length   316 a.a.
NCBI ID   WP_121613750.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 547479..558429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS02715 - 547499..548518 (-) 1020 WP_121609591.1 ABC transporter ATP-binding protein -
  D9829_RS02720 - 548682..549365 (-) 684 WP_257535655.1 DUF2268 domain-containing protein -
  D9829_RS02725 fabF 549549..550790 (-) 1242 WP_121609592.1 beta-ketoacyl-ACP synthase II -
  D9829_RS02730 - 550821..551753 (-) 933 WP_121609593.1 beta-ketoacyl-ACP synthase III -
  D9829_RS02735 - 551955..552224 (+) 270 WP_121609594.1 hypothetical protein -
  D9829_RS02740 comZ 552262..552456 (-) 195 WP_121609595.1 ComZ family protein Regulator
  D9829_RS02745 med 552479..553429 (-) 951 WP_121613750.1 BMP family ABC transporter substrate-binding protein Regulator
  D9829_RS02750 - 553592..554479 (-) 888 WP_121609596.1 hypothetical protein -
  D9829_RS02755 - 554547..555287 (-) 741 WP_121609597.1 hydrolase -
  D9829_RS02760 - 555562..555753 (+) 192 WP_121609598.1 YjzD family protein -
  D9829_RS02765 clpB 555825..558422 (-) 2598 WP_121609599.1 ATP-dependent chaperone ClpB -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35269.76 Da        Isoelectric Point: 4.4834

>NTDB_id=320658 D9829_RS02745 WP_121613750.1 552479..553429(-) (med) [Mesobacillus foraminis strain Bac44]
MLKRLGLILLSLLLLGGCGQPLATGKVEKVGMLVPETINDQVWGTKGYRGLLKIQSRFEVDVYYKEGMDSEPLVEQAVEE
FSQKGVNLIFGHGNEYAQYFNGLSKEYPEIHFISFNGDAKNINTTSLNFEAYAMGFFGGMVAAHMSKTKHIAVVAAYEWQ
PEIEGFYEGSTFYDNEIDVDIRYVGHWDNDQKALDILDGLITQGADVVYPAGDGYNIPVIEKVKEKGLYVVGYISDQSDL
GESTVLTSTVQHVDQLYVLAAKKFNDGELNSGNLSFDFKDEVISMGKYSPNVDDEFKEELNKHISTYKKTGKLPNE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=320658 D9829_RS02745 WP_121613750.1 552479..553429(-) (med) [Mesobacillus foraminis strain Bac44]
ATGTTAAAACGTTTGGGGCTTATTTTACTAAGCCTATTATTGCTGGGTGGTTGCGGACAACCCCTTGCAACTGGAAAGGT
TGAGAAAGTCGGCATGCTTGTGCCTGAAACAATAAATGACCAGGTATGGGGGACAAAAGGCTATCGCGGTCTCCTTAAAA
TTCAATCCCGTTTTGAGGTGGACGTTTATTATAAAGAGGGCATGGATTCCGAGCCGCTGGTCGAACAAGCTGTTGAGGAA
TTCTCACAGAAGGGCGTCAACCTGATTTTTGGGCATGGAAATGAATATGCCCAATATTTTAATGGTTTGTCCAAAGAGTA
TCCTGAAATTCACTTTATCAGTTTTAATGGGGATGCAAAAAACATAAATACAACCAGTCTCAATTTTGAAGCCTATGCGA
TGGGCTTTTTTGGAGGGATGGTGGCAGCTCATATGTCTAAAACTAAACACATTGCCGTTGTCGCAGCCTATGAATGGCAA
CCCGAAATTGAAGGTTTTTATGAGGGATCAACCTTTTATGACAATGAAATAGATGTTGATATCCGATATGTAGGCCATTG
GGACAATGACCAAAAGGCGCTGGATATACTTGATGGCTTAATCACTCAGGGAGCAGATGTGGTTTATCCTGCGGGAGATG
GGTATAATATCCCTGTTATTGAAAAAGTAAAGGAAAAAGGATTATATGTTGTTGGTTATATTTCCGATCAATCGGATCTA
GGCGAGTCGACAGTGCTTACAAGTACGGTTCAGCATGTTGACCAGCTCTATGTGCTTGCTGCAAAAAAATTCAATGATGG
GGAATTAAACTCAGGGAATTTATCTTTTGATTTCAAGGATGAAGTCATTTCGATGGGCAAATACAGCCCGAATGTGGATG
ATGAATTCAAGGAAGAGCTAAATAAGCATATCAGCACTTATAAGAAAACTGGCAAACTGCCAAACGAATAG

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

53.503

99.367

0.532

Multiple sequence alignment