Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FD987_RS06155 Genome accession   NZ_CP040239
Coordinates   1204917..1205783 (-) Length   288 a.a.
NCBI ID   WP_002777377.1    Uniprot ID   A0ABP2NR16
Organism   Campylobacter coli strain S9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1199917..1210783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06130 (FD987_06130) radA/sms 1200395..1201735 (-) 1341 WP_002786478.1 DNA repair protein RadA Machinery gene
  FD987_RS06135 (FD987_06135) - 1201871..1202722 (+) 852 WP_072219013.1 carbon-nitrogen hydrolase family protein -
  FD987_RS06140 (FD987_06140) - 1202725..1203606 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  FD987_RS06145 (FD987_06145) - 1203648..1203983 (+) 336 WP_002777373.1 hypothetical protein -
  FD987_RS06150 (FD987_06150) - 1203976..1204920 (+) 945 WP_002777375.1 GTP-binding protein -
  FD987_RS06155 (FD987_06155) pilA 1204917..1205783 (-) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  FD987_RS06160 (FD987_06160) - 1205783..1206340 (-) 558 WP_002777379.1 TlpA disulfide reductase family protein -
  FD987_RS06165 (FD987_06165) - 1206421..1207047 (+) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  FD987_RS06170 (FD987_06170) rny 1206968..1208521 (+) 1554 WP_002777382.1 ribonuclease Y -
  FD987_RS06175 (FD987_06175) - 1208532..1209089 (+) 558 WP_002781270.1 DedA family protein -
  FD987_RS06180 (FD987_06180) - 1209089..1210348 (+) 1260 WP_002777385.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31816.85 Da        Isoelectric Point: 5.1228

>NTDB_id=320646 FD987_RS06155 WP_002777377.1 1204917..1205783(-) (pilA) [Campylobacter coli strain S9]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=320646 FD987_RS06155 WP_002777377.1 1204917..1205783(-) (pilA) [Campylobacter coli strain S9]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGCACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444