Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   FD987_RS06130 Genome accession   NZ_CP040239
Coordinates   1200395..1201735 (-) Length   446 a.a.
NCBI ID   WP_002786478.1    Uniprot ID   -
Organism   Campylobacter coli strain S9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1195395..1206735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD987_RS06105 (FD987_06105) - 1195441..1196211 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  FD987_RS06110 (FD987_06110) metE 1196234..1198498 (+) 2265 WP_002788129.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  FD987_RS06115 (FD987_06115) metF 1198508..1199356 (+) 849 WP_002794477.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  FD987_RS06120 (FD987_06120) - 1199366..1199566 (-) 201 WP_002777366.1 hypothetical protein -
  FD987_RS06125 (FD987_06125) - 1199563..1200243 (-) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  FD987_RS06130 (FD987_06130) radA/sms 1200395..1201735 (-) 1341 WP_002786478.1 DNA repair protein RadA Machinery gene
  FD987_RS06135 (FD987_06135) - 1201871..1202722 (+) 852 WP_072219013.1 carbon-nitrogen hydrolase family protein -
  FD987_RS06140 (FD987_06140) - 1202725..1203606 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  FD987_RS06145 (FD987_06145) - 1203648..1203983 (+) 336 WP_002777373.1 hypothetical protein -
  FD987_RS06150 (FD987_06150) - 1203976..1204920 (+) 945 WP_002777375.1 GTP-binding protein -
  FD987_RS06155 (FD987_06155) pilA 1204917..1205783 (-) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  FD987_RS06160 (FD987_06160) - 1205783..1206340 (-) 558 WP_002777379.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49106.01 Da        Isoelectric Point: 6.9143

>NTDB_id=320645 FD987_RS06130 WP_002786478.1 1200395..1201735(-) (radA/sms) [Campylobacter coli strain S9]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVRDITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=320645 FD987_RS06130 WP_002786478.1 1200395..1201735(-) (radA/sms) [Campylobacter coli strain S9]
ATGGCTAAAAATAAAATTCTTTTTGAATGTCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGCGGAGAAGAAAGTAAGGCGCAAATTAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAACAAAATTGCTTCAGCAGCTGG
AAGTATCACTCAAGTGCGCGATATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAATTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.139

96.861

0.437
  radA Streptococcus pneumoniae Rx1

44.24

97.309

0.43
  radA Streptococcus pneumoniae D39

44.24

97.309

0.43
  radA Streptococcus pneumoniae R6

44.24

97.309

0.43
  radA Streptococcus pneumoniae TIGR4

44.24

97.309

0.43
  radA Streptococcus mitis SK321

44.213

96.861

0.428
  radA Streptococcus mitis NCTC 12261

44.213

96.861

0.428